Protein : Qrob_P0461630.2 Q. robur
Protein Identifier  ? Qrob_P0461630.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K03031 - 26S proteasome regulatory subunit N12 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 268  
Kegg Orthology  K03031
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0005838 proteasome regulatory particle A multisubunit complex, which caps one or both ends of the proteasome core complex. This complex recognizes and unfolds ubiquitinated proteins, and translocates them to the proteasome core complex.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100258086 1 267 + 267 none 100.00 267 88.76 5e-165 26S proteasome non-ATPase regulatory subunit RPN12A-like
blastp_kegg lcl|pper:PRUPE_ppa007809mg 1 267 + 267 none 75.21 355 88.01 4e-164 hypothetical protein
blastp_kegg lcl|gmx:100785835 1 267 + 267 none 100.00 267 88.01 6e-164 26S proteasome non-ATPase regulatory subunit RPN12A-like
blastp_kegg lcl|cam:101489653 1 267 + 267 none 100.00 267 87.27 2e-163 26S proteasome non-ATPase regulatory subunit RPN12A-like
blastp_kegg lcl|gmx:100803720 1 267 + 267 none 100.00 267 88.01 2e-163 26S proteasome non-ATPase regulatory subunit 8 homolog A-like
blastp_kegg lcl|tcc:TCM_025368 1 267 + 267 none 100.00 267 87.64 3e-163 Regulatory particle non-ATPase 12A isoform 1
blastp_kegg lcl|mtr:MTR_1g016750 1 267 + 267 none 100.00 267 87.64 4e-163 26S proteasome non-ATPase regulatory subunit
blastp_kegg lcl|cmo:103493070 1 267 + 267 none 100.00 267 87.27 5e-163 26S proteasome non-ATPase regulatory subunit 8 homolog A
blastp_kegg lcl|cam:101512310 1 267 + 267 none 100.00 267 86.89 7e-163 26S proteasome non-ATPase regulatory subunit RPN12A-like
blastp_kegg lcl|pvu:PHAVU_002G197600g 1 267 + 267 none 100.00 267 87.64 1e-162 hypothetical protein
blastp_uniprot_sprot sp|Q9SGW3|PSD8A_ARATH 1 267 + 267 none 100.00 267 80.52 9e-150 26S proteasome non-ATPase regulatory subunit 8 homolog A OS Arabidopsis thaliana GN RPN12A PE 1 SV 1
blastp_uniprot_sprot sp|Q9FHY0|PSD8B_ARATH 1 267 + 267 Gaps:34 100.00 233 71.24 2e-106 Putative 26S proteasome non-ATPase regulatory subunit 8 homolog B OS Arabidopsis thaliana GN RPN12B PE 5 SV 2
blastp_uniprot_sprot sp|P02889|PSMD8_DICDI 12 267 + 256 Gaps:7 95.44 263 41.43 1e-58 Probable 26S proteasome non-ATPase regulatory subunit 8 OS Dictyostelium discoideum GN psmD8-1 PE 3 SV 2
blastp_uniprot_sprot sp|Q3SYT7|PSMD8_BOVIN 5 267 + 263 Gaps:8 91.64 287 39.92 4e-43 26S proteasome non-ATPase regulatory subunit 8 OS Bos taurus GN PSMD8 PE 2 SV 3
blastp_uniprot_sprot sp|Q5RE15|PSMD8_PONAB 5 267 + 263 Gaps:8 91.00 289 39.92 4e-43 26S proteasome non-ATPase regulatory subunit 8 (Fragment) OS Pongo abelii GN PSMD8 PE 2 SV 2
blastp_uniprot_sprot sp|P48556|PSMD8_HUMAN 5 267 + 263 Gaps:8 75.14 350 39.92 2e-42 26S proteasome non-ATPase regulatory subunit 8 OS Homo sapiens GN PSMD8 PE 1 SV 2
blastp_uniprot_sprot sp|Q9CX56|PSMD8_MOUSE 5 267 + 263 Gaps:8 74.50 353 40.30 4e-42 26S proteasome non-ATPase regulatory subunit 8 OS Mus musculus GN Psmd8 PE 1 SV 2
blastp_uniprot_sprot sp|P50524|RPN12_SCHPO 21 267 + 247 Gaps:31 94.81 270 35.16 2e-35 26S proteasome regulatory subunit rpn12 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpn12 PE 1 SV 1
blastp_uniprot_sprot sp|Q23449|PSMD8_CAEEL 61 267 + 207 Gaps:6 81.20 250 31.53 5e-25 26S proteasome non-ATPase regulatory subunit 8 OS Caenorhabditis elegans GN rpn-12 PE 1 SV 1
blastp_uniprot_sprot sp|P32496|RPN12_YEAST 8 267 + 260 Gaps:15 98.91 274 29.15 2e-22 26S proteasome regulatory subunit RPN12 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPN12 PE 1 SV 3
rpsblast_cdd gnl|CDD|202616 60 207 + 148 Gaps:4 92.90 155 33.33 2e-27 pfam03399 SAC3_GANP SAC3/GANP/Nin1/mts3/eIF-3 p25 family. This large family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 and mammalian GANP/MCM3-associated proteins which facilitate the nuclear localisation of MCM3 a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits stabilisation of ternary complex binding to 40 S subunits and dissociation of 40 and 60 S subunits.
rpsblast_cdd gnl|CDD|204392 103 246 + 144 Gaps:4 100.00 144 32.64 9e-23 pfam10075 PCI_Csn8 COP9 signalosome subunit CSN8. This PCI_Csn8 domain is conserved from plants to humans. It is a signature protein motif found in components of CSN (COP9 signalosome). It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development.
rpsblast_kog gnl|CDD|38361 8 267 + 260 Gaps:4 100.00 260 51.92 1e-84 KOG3151 KOG3151 KOG3151 26S proteasome regulatory complex subunit RPN12/PSMD8 [Posttranslational modification protein turnover chaperones].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 56 209 154 PF03399 none SAC3/GANP/Nin1/mts3/eIF-3 p25 family IPR005062
PANTHER 1 267 267 PTHR12387 none none IPR006746

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting