Protein : Qrob_P0460850.2 Q. robur
Protein Identifier  ? Qrob_P0460850.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K14574 - ribosome maturation protein SDO1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 362  
Kegg Orthology  K14574
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0042254 ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102611954 1 361 + 361 Gaps:4 100.00 357 76.19 0.0 ribosome maturation protein SBDS-like
blastp_kegg lcl|cic:CICLE_v10001639mg 1 361 + 361 Gaps:4 100.00 357 75.91 0.0 hypothetical protein
blastp_kegg lcl|mdm:103407408 1 361 + 361 Gaps:19 100.00 378 71.69 0.0 ribosome maturation protein SBDS
blastp_kegg lcl|pxb:103957892 1 361 + 361 Gaps:19 100.00 378 71.16 0.0 ribosome maturation protein SBDS
blastp_kegg lcl|pmum:103336444 1 361 + 361 Gaps:19 100.00 378 71.43 0.0 ribosome maturation protein SBDS
blastp_kegg lcl|pop:POPTR_0002s07410g 1 361 + 361 Gaps:5 100.00 356 74.72 0.0 POPTRDRAFT_816238 hypothetical protein
blastp_kegg lcl|tcc:TCM_035364 1 361 + 361 Gaps:9 100.00 368 72.55 0.0 Sequence-specific DNA binding transcription factors
blastp_kegg lcl|mus:103971813 1 361 + 361 Gaps:7 100.00 356 73.88 0.0 ribosome maturation protein SBDS
blastp_kegg lcl|vvi:100259091 1 361 + 361 Gaps:5 100.00 358 73.74 0.0 ribosome maturation protein SBDS-like
blastp_kegg lcl|pda:103718238 1 361 + 361 Gaps:5 100.00 356 73.31 0.0 ribosome maturation protein SBDS
blastp_pdb 2l9n_A 2 237 + 236 Gaps:4 94.44 252 53.36 3e-79 mol:protein length:252 Ribosome maturation protein SBDS
blastp_pdb 2kdo_A 4 237 + 234 Gaps:4 93.65 252 53.39 9e-79 mol:protein length:252 Ribosome maturation protein SBDS
blastp_pdb 1p9q_C 14 230 + 217 Gaps:4 84.77 256 23.50 3e-17 mol:protein length:256 Hypothetical protein AF0491
blastp_pdb 1t95_A 14 230 + 217 Gaps:4 90.42 240 23.50 3e-17 mol:protein length:240 Hypothetical protein AF0491
blastp_pdb 2wbm_B 14 181 + 168 Gaps:1 67.06 252 23.08 6e-11 mol:protein length:252 RIBOSOME MATURATION PROTEIN SDO1 HOMOLOG
blastp_pdb 2wbm_A 14 181 + 168 Gaps:1 67.06 252 23.08 6e-11 mol:protein length:252 RIBOSOME MATURATION PROTEIN SDO1 HOMOLOG
blastp_uniprot_sprot sp|Q3SWZ6|SBDS_BOVIN 4 238 + 235 Gaps:4 94.80 250 53.59 1e-79 Ribosome maturation protein SBDS OS Bos taurus GN SBDS PE 2 SV 1
blastp_uniprot_sprot sp|Q5RK30|SBDS_RAT 4 238 + 235 Gaps:4 94.80 250 53.16 9e-79 Ribosome maturation protein SBDS OS Rattus norvegicus GN Sbds PE 2 SV 1
blastp_uniprot_sprot sp|P70122|SBDS_MOUSE 4 238 + 235 Gaps:4 94.80 250 53.16 1e-78 Ribosome maturation protein SBDS OS Mus musculus GN Sbds PE 1 SV 4
blastp_uniprot_sprot sp|Q5RAZ2|SBDS_PONAB 4 237 + 234 Gaps:4 94.40 250 53.39 3e-78 Ribosome maturation protein SBDS OS Pongo abelii GN SBDS PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y3A5|SBDS_HUMAN 4 237 + 234 Gaps:4 94.40 250 53.39 3e-78 Ribosome maturation protein SBDS OS Homo sapiens GN SBDS PE 1 SV 4
blastp_uniprot_sprot sp|A5D8M6|SBDS_XENLA 4 238 + 235 Gaps:4 94.80 250 54.01 2e-76 Ribosome maturation protein SBDS OS Xenopus laevis GN sbds PE 2 SV 1
blastp_uniprot_sprot sp|Q5ZIY4|SBDS_CHICK 4 238 + 235 Gaps:4 94.80 250 52.74 2e-76 Ribosome maturation protein SBDS OS Gallus gallus GN SBDS PE 2 SV 1
blastp_uniprot_sprot sp|Q6DIT8|SBDS_XENTR 4 238 + 235 Gaps:4 94.80 250 52.32 2e-74 Ribosome maturation protein SBDS OS Xenopus tropicalis GN sbds PE 2 SV 1
blastp_uniprot_sprot sp|Q86KZ5|SBDS_DICDI 4 251 + 248 Gaps:4 91.97 274 45.63 6e-74 Ribosome maturation protein SBDS OS Dictyostelium discoideum GN sbds PE 3 SV 2
blastp_uniprot_sprot sp|Q23202|SBDS_CAEEL 1 249 + 249 Gaps:3 99.60 253 41.67 2e-65 Ribosome maturation protein SBDS OS Caenorhabditis elegans GN sbds-1 PE 3 SV 2
rpsblast_cdd gnl|CDD|185627 4 357 + 354 Gaps:31 97.86 373 35.34 7e-58 PTZ00448 PTZ00448 hypothetical protein Provisional.
rpsblast_cdd gnl|CDD|31689 11 237 + 227 Gaps:5 97.44 234 31.58 3e-42 COG1500 COG1500 Predicted exosome subunit [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|129392 11 222 + 212 Gaps:4 91.77 231 29.72 4e-38 TIGR00291 RNA_SBDS rRNA metabolism protein SBDS family. This protein family possibly universal in both archaea and eukaryotes appears to be involved in (ribosomal) RNA metabolism. Mutations in the human ortholog are associated with Shwachman-Bodian-Diamond syndrome.
rpsblast_cdd gnl|CDD|192273 109 227 + 119 Gaps:3 96.83 126 40.98 4e-34 pfam09377 SBDS_C SBDS protein C-terminal domain. This family is highly conserved in species ranging from archaea to vertebrates and plants. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency haematological dysfunction and skeletal abnormalities. Members of this family play a role in RNA metabolism.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 109 228 120 PF09377 none SBDS protein C-terminal domain IPR018978
PANTHER 2 290 289 PTHR10927:SF1 none none none
PANTHER 2 290 289 PTHR10927 none none IPR002140
ProSitePatterns 302 324 23 PS00028 none Zinc finger C2H2 type domain signature. IPR007087
SUPERFAMILY 296 345 50 SSF57667 none none none
TIGRFAM 13 229 217 TIGR00291 none RNA_SBDS: rRNA metabolism protein, SBDS family IPR002140
SUPERFAMILY 13 96 84 SSF89895 none none IPR019783
SUPERFAMILY 98 171 74 SSF109728 none none none
Gene3D 17 96 80 G3DSA:3.30.1250.10 none none IPR019783
ProSitePatterns 46 65 20 PS01267 none Uncharacterized protein family UPF0023 signature. IPR018023
Pfam 15 104 90 PF01172 none Shwachman-Bodian-Diamond syndrome (SBDS) protein IPR019783

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting