Protein : Qrob_P0458490.2 Q. robur
Protein Identifier  ? Qrob_P0458490.2 Organism . Name  Quercus robur
Score  90.0 Score Type  egn
Protein Description  (M=2) PTHR23344:SF8 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE-LIKE PROTEIN-RELATED (PTHR23344:SF8) Code Enzyme  EC:3.1.4.46
Gene Prediction Quality  validated Protein length 

Sequence

Length: 920  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006629 lipid metabolic process The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
GO:0008081 phosphoric diester hydrolase activity Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group.
GO:0006071 glycerol metabolic process The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
GO:0008889 glycerophosphodiester phosphodiesterase activity Catalysis of the reaction: a glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0046160 4 919 + 916 Gaps:7 94.14 768 69.57 0.0 glycerophosphoryl diester phosphodiesterase putative
blastp_kegg lcl|pxb:103928135 4 918 + 915 Gaps:8 95.74 752 69.86 0.0 probable glycerophosphoryl diester phosphodiesterase 2
blastp_kegg lcl|mdm:103430075 4 918 + 915 Gaps:8 95.74 752 69.17 0.0 probable glycerophosphoryl diester phosphodiesterase 2
blastp_kegg lcl|pper:PRUPE_ppa001847mg 4 919 + 916 Gaps:14 95.50 756 68.42 0.0 hypothetical protein
blastp_kegg lcl|pmum:103326598 4 919 + 916 Gaps:7 95.50 755 68.24 0.0 probable glycerophosphoryl diester phosphodiesterase 2
blastp_kegg lcl|pxb:103951440 4 918 + 915 Gaps:8 95.74 752 67.36 0.0 probable glycerophosphoryl diester phosphodiesterase 2
blastp_kegg lcl|pxb:103940108 4 918 + 915 Gaps:8 95.74 752 67.22 0.0 probable glycerophosphoryl diester phosphodiesterase 2
blastp_kegg lcl|vvi:100246982 4 907 + 904 Gaps:7 94.06 757 66.43 0.0 probable glycerophosphoryl diester phosphodiesterase 1-like
blastp_kegg lcl|gmx:100811399 4 918 + 915 Gaps:13 95.75 753 66.99 0.0 probable glycerophosphoryl diester phosphodiesterase 3-like
blastp_kegg lcl|tcc:TCM_030755 4 918 + 915 Gaps:13 95.00 760 66.07 0.0 PLC-like phosphodiesterase family protein putative isoform 1
blastp_uniprot_sprot sp|Q9SZ11|GLPQ2_ARATH 4 919 + 916 Gaps:8 94.99 759 60.75 0.0 Probable glycerophosphoryl diester phosphodiesterase 2 OS Arabidopsis thaliana GN GPDL2 PE 1 SV 3
blastp_uniprot_sprot sp|Q9FJ62|GLPQ1_ARATH 4 919 + 916 Gaps:11 94.26 766 58.03 0.0 Probable glycerophosphoryl diester phosphodiesterase 1 OS Arabidopsis thaliana GN GPDL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q7Y208|GLPQ3_ARATH 4 900 + 897 Gaps:9 92.14 763 58.32 0.0 Probable glycerophosphoryl diester phosphodiesterase 3 OS Arabidopsis thaliana GN GPDL3 PE 1 SV 2
rpsblast_cdd gnl|CDD|176545 9 624 + 616 Gaps:43 100.00 299 73.24 1e-131 cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs) which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both SHV3 and SVLs have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition the two tandem repeats show low sequence similarity to each other suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date SHV3 orthologues are only found in Physcomitrella patens. This family includes domain I the first GDPD domain of SHV3 and SVLs.
rpsblast_cdd gnl|CDD|176546 9 816 + 808 Gaps:47 100.00 300 72.67 1e-129 cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs) which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both SHV3 and SVLs have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition the two tandem repeats show low sequence similarity to each other suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date SHV3 orthologues are only found in Physcomitrella patens. This CD includes domain II (the second GDPD domain of SHV3 and SVLs) which is necessary for SHV3 function.
rpsblast_cdd gnl|CDD|176513 9 816 + 808 Gaps:37 100.00 302 79.80 1e-102 cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs) which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both SHV3 and SVLs have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition the two tandem repeats show low sequence similarity to each other suggesting they have different biochemical function. Most members of this family are Arabidopsis-specific gene products. To date SHV3 orthologues are only found in Physcomitrella patens.
rpsblast_cdd gnl|CDD|176544 9 619 + 611 Gaps:73 100.00 309 45.95 3e-37 cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs) all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome and in plants two distinct Arabidopsis thaliana genes AT5G08030 and AT1G74210 coding putative GP-PDEs from the cell walls and vacuoles respectively.
rpsblast_cdd gnl|CDD|176502 9 619 + 611 Gaps:77 100.00 296 42.91 2e-26 cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols which are major sources of carbon and phosphate. In E. coli there are two major G3P uptake systems: Glp and Ugp which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters such as glycerophosphocholine (GPC) glycerophosphoethanolanmine (GPE) glycerophosphoglycerol (GPG) glycerophosphoinositol (GPI) and glycerophosphoserine (GPS) to the corresponding alcohols and G3P which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for GlpQ enzymatic activity. This subfamily also includes some GP-GDEs in higher plants and their eukaryotic homologs which show very high sequence similarities with bacterial periplasmic GP-GDEs.
rpsblast_cdd gnl|CDD|202508 332 619 + 288 Gaps:66 98.32 238 26.07 2e-15 pfam03009 GDPD Glycerophosphoryl diester phosphodiesterase family. E. coli has two sequence related isozymes of glycerophosphoryl diester phosphodiesterase (GDPD) - periplasmic and cytosolic. This family also includes agrocinopine synthase the similarity to GDPD has been noted. This family appears to have weak but not significant matches to mammalian phospholipase C pfam00388 which suggests that this family may adopt a TIM barrel fold.
rpsblast_cdd gnl|CDD|176542 11 302 + 292 Gaps:53 99.06 318 26.67 6e-13 cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE EC 3.1.4.46) GlpQ and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters such as glycerophosphocholine (GPC) glycerophosphoethanolanmine (GPE) glycerophosphoglycerol (GPG) glycerophosphoinositol (GPI) and glycerophosphoserine (GPS) to the corresponding alcohols and G3P which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for the enzymatic activity of GlpQ. This family also includes a surface-exposed lipoprotein protein D (HPD) from Haemophilus influenza Type b and nontypeable strains which shows very high sequence similarity with E. coli GlpQ. HPD has been characterized as a human immunoglobulin D-binding protein with glycerophosphodiester phosphodiesterase activity. It can hydrolyze phosphatidylcholine from host membranes to produce free choline on the lipopolysaccharides on the surface of pathogenic bacteria.
rpsblast_cdd gnl|CDD|30929 320 629 + 310 Gaps:55 100.00 257 25.29 4e-09 COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion].
rpsblast_kog gnl|CDD|37469 250 829 + 580 Gaps:52 100.00 341 40.76 6e-61 KOG2258 KOG2258 KOG2258 Glycerophosphoryl diester phosphodiesterase [Energy production and conversion].

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 402 681 280 PTHR23344 none none IPR004129
PANTHER 402 681 280 PTHR23344:SF8 none none none
Gene3D 724 816 93 G3DSA:3.20.20.190 none none IPR017946
Gene3D 8 307 300 G3DSA:3.20.20.190 none none IPR017946
Gene3D 326 625 300 G3DSA:3.20.20.190 none none IPR017946
PANTHER 87 384 298 PTHR23344:SF8 none none none
PANTHER 87 384 298 PTHR23344 none none IPR004129
ProSiteProfiles 325 626 302 PS51704 none GP-PDE domain profile. IPR030395
SUPERFAMILY 326 625 300 SSF51695 none none IPR017946
Pfam 41 303 263 PF03009 none Glycerophosphoryl diester phosphodiesterase family IPR030395
Pfam 332 621 290 PF03009 none Glycerophosphoryl diester phosphodiesterase family IPR030395
Phobius 919 919 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 7 308 302 SSF51695 none none IPR017946
Phobius 899 918 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 9 309 301 PS51704 none GP-PDE domain profile. IPR030395
Phobius 1 898 898 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 707 816 110 SSF51695 none none IPR017946

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting