Protein : Qrob_P0455700.2 Q. robur
Protein Identifier  ? Qrob_P0455700.2 Organism . Name  Quercus robur
Score  91.1 Score Type  egn
Protein Description  (M=3) PTHR10231//PTHR10231:SF25 - NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 180  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0000139 Golgi membrane The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
GO:0005351 sugar:proton symporter activity Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in).
GO:0008643 carbohydrate transport The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_025074 1 167 + 167 none 41.65 401 89.22 1e-99 Nucleotide-sugar transporter family protein
blastp_kegg lcl|rcu:RCOM_1077250 1 167 + 167 none 41.75 400 89.82 4e-99 UDP-galactose/UDP-N-acetylglucosamine transporter putative
blastp_kegg lcl|pda:103707783 1 167 + 167 none 40.63 411 88.62 4e-98 CMP-sialic acid transporter 3-like
blastp_kegg lcl|atr:s00066p00054390 1 167 + 167 none 41.65 401 87.43 6e-98 AMTR_s00066p00054390 hypothetical protein
blastp_kegg lcl|sly:101255035 1 167 + 167 none 41.23 405 86.83 3e-96 CMP-sialic acid transporter 2-like
blastp_kegg lcl|tcc:TCM_021551 1 167 + 167 none 41.34 404 86.83 4e-96 Nucleotide-sugar transporter family protein isoform 1
blastp_kegg lcl|pda:103708557 1 167 + 167 none 41.34 404 86.23 1e-95 CMP-sialic acid transporter 3-like
blastp_kegg lcl|cic:CICLE_v10011853mg 1 167 + 167 none 52.68 317 86.23 2e-95 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s18780g 1 167 + 167 none 41.44 403 86.83 3e-95 POPTRDRAFT_822353 hypothetical protein
blastp_kegg lcl|sot:102595633 1 167 + 167 none 41.23 405 85.63 4e-95 CMP-sialic acid transporter 2-like
blastp_uniprot_sprot sp|Q9C5H6|CSTR3_ARATH 1 167 + 167 none 41.23 405 82.63 3e-93 CMP-sialic acid transporter 3 OS Arabidopsis thaliana GN UTR6 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GY97|CSTR2_ARATH 1 167 + 167 none 41.13 406 80.24 2e-90 CMP-sialic acid transporter 2 OS Arabidopsis thaliana GN At2g43240 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LGE9|CSTR1_ARATH 4 171 + 168 Gaps:6 50.00 340 29.41 2e-18 CMP-sialic acid transporter 1 OS Arabidopsis thaliana GN At5g41760 PE 2 SV 1
blastp_uniprot_sprot sp|F4JN00|CSTR4_ARATH 4 171 + 168 Gaps:6 46.02 352 32.10 9e-16 CMP-sialic acid transporter 4 OS Arabidopsis thaliana GN At4g35335 PE 2 SV 1
blastp_uniprot_sprot sp|A0JMG9|S35A4_DANRE 1 179 + 179 Gaps:8 55.10 314 29.48 5e-13 Probable UDP-sugar transporter protein SLC35A4 OS Danio rerio GN slc35a4 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DCG9|S35A5_XENLA 4 179 + 176 Gaps:49 54.00 413 27.35 1e-10 Probable UDP-sugar transporter protein SLC35A5 OS Xenopus laevis GN slc35a5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9D321|S35A4_MOUSE 1 179 + 179 Gaps:19 56.79 324 31.52 1e-10 Probable UDP-sugar transporter protein SLC35A4 OS Mus musculus GN Slc35a4 PE 2 SV 1
blastp_uniprot_sprot sp|Q91ZR7|S35A4_RAT 1 179 + 179 Gaps:19 56.79 324 31.52 9e-10 Probable UDP-sugar transporter protein SLC35A4 OS Rattus norvegicus GN Slc35a4 PE 2 SV 2
blastp_uniprot_sprot sp|A4IHW3|S35A4_XENTR 1 176 + 176 Gaps:10 53.58 321 26.16 2e-09 Probable UDP-sugar transporter protein SLC35A4 OS Xenopus tropicalis GN slc35a4 PE 2 SV 1
blastp_uniprot_sprot sp|Q96G79|S35A4_HUMAN 1 179 + 179 Gaps:19 56.79 324 29.35 1e-07 Probable UDP-sugar transporter protein SLC35A4 OS Homo sapiens GN SLC35A4 PE 2 SV 1
rpsblast_cdd gnl|CDD|112934 4 163 + 160 Gaps:10 67.23 238 25.00 6e-12 pfam04142 Nuc_sug_transp Nucleotide-sugar transporter. This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human SLC35A1 transports CMP-sialic acid SLC35A2 transports UDP-galactose and SLC35A3 transports UDP-GlcNAc.
rpsblast_kog gnl|CDD|37445 4 163 + 160 Gaps:4 46.38 345 30.00 2e-20 KOG2234 KOG2234 KOG2234 Predicted UDP-galactose transporter [Carbohydrate transport and metabolism].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 12 28 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 73 93 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 163 163 PTHR10231 none none IPR007271
Phobius 94 104 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 29 34 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 1 163 163 PTHR10231:SF25 none none none
Pfam 5 167 163 PF04142 none Nucleotide-sugar transporter IPR007271
Phobius 105 126 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 54 72 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 127 179 53 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 35 53 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 11 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

4 Localization

Analysis Start End Length
TMHMM 141 160 19
TMHMM 71 93 22
TMHMM 106 126 20
TMHMM 13 35 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting