Protein : Qrob_P0455090.2 Q. robur

Protein Identifier  ? Qrob_P0455090.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K03139 - transcription initiation factor TFIIF subunit beta [EC:3.6.4.12] Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 286  
Kegg Orthology  K03139

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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0006367 transcription initiation from RNA polymerase II promoter Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
GO:0005674 transcription factor TFIIF complex A general transcription initiation factor which in humans consists of a heterodimer of an alpha and a beta subunit. Helps recruit RNA polymerase II to the initiation complex and promotes translation elongation.
GO:0006366 transcription from RNA polymerase II promoter The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100790941 16 280 + 265 Gaps:9 97.34 263 77.73 1e-149 general transcription factor IIF subunit 2-like
blastp_kegg lcl|pvu:PHAVU_004G074500g 17 280 + 264 Gaps:9 98.46 259 76.47 7e-147 hypothetical protein
blastp_kegg lcl|pmum:103332391 17 285 + 269 Gaps:13 96.40 278 76.87 1e-142 general transcription factor IIF subunit 2
blastp_kegg lcl|pper:PRUPE_ppa021341mg 30 285 + 256 Gaps:10 92.81 278 77.91 5e-141 hypothetical protein
blastp_kegg lcl|vvi:100263243 24 285 + 262 Gaps:11 98.44 257 77.47 9e-136 general transcription factor IIF subunit 2-like
blastp_kegg lcl|cam:101495008 27 280 + 254 Gaps:9 98.79 248 71.02 5e-133 general transcription factor IIF subunit 2-like
blastp_kegg lcl|rcu:RCOM_0179570 30 284 + 255 Gaps:8 88.85 278 74.90 5e-133 Transcription initiation factor IIF subunit beta putative
blastp_kegg lcl|tcc:TCM_043099 25 284 + 260 Gaps:4 99.24 262 73.46 2e-130 JHL18I08.10 protein isoform 1
blastp_kegg lcl|fve:101299911 4 284 + 281 Gaps:16 95.36 280 69.29 4e-128 general transcription factor IIF subunit 2-like
blastp_kegg lcl|cit:102610310 13 283 + 271 Gaps:19 98.54 274 70.00 4e-126 general transcription factor IIF subunit 2-like
blastp_pdb 2bby_A 211 276 + 66 none 95.65 69 39.39 2e-11 mol:protein length:69 RAP30
blastp_pdb 1bby_A 211 276 + 66 none 95.65 69 39.39 2e-11 mol:protein length:69 RAP30
blastp_uniprot_sprot sp|Q2T9L9|T2FB_BOVIN 30 281 + 252 Gaps:41 95.18 249 29.54 4e-17 General transcription factor IIF subunit 2 OS Bos taurus GN GTF2F2 PE 2 SV 1
blastp_uniprot_sprot sp|O94424|T2FB_SCHPO 101 278 + 178 Gaps:9 58.96 307 30.39 3e-16 Transcription initiation factor IIF subunit beta OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN tfg2 PE 1 SV 1
blastp_uniprot_sprot sp|Q01750|T2FB_RAT 30 281 + 252 Gaps:41 95.18 249 29.11 4e-16 General transcription factor IIF subunit 2 OS Rattus norvegicus GN Gtf2f2 PE 2 SV 1
blastp_uniprot_sprot sp|P41900|T2FB_DROME 30 277 + 248 Gaps:45 87.73 277 28.81 8e-16 General transcription factor IIF subunit 2 OS Drosophila melanogaster GN TfIIFbeta PE 2 SV 2
blastp_uniprot_sprot sp|Q8R0A0|T2FB_MOUSE 30 281 + 252 Gaps:41 95.18 249 29.54 1e-15 General transcription factor IIF subunit 2 OS Mus musculus GN Gtf2f2 PE 1 SV 1
blastp_uniprot_sprot sp|P13984|T2FB_HUMAN 120 281 + 162 Gaps:15 61.45 249 32.68 8e-15 General transcription factor IIF subunit 2 OS Homo sapiens GN GTF2F2 PE 1 SV 2
blastp_uniprot_sprot sp|Q03123|T2FB_XENLA 120 281 + 162 Gaps:21 62.50 264 27.88 1e-13 General transcription factor IIF subunit 2 OS Xenopus laevis GN gtf2f2 PE 2 SV 1
blastp_uniprot_sprot sp|Q54KT7|T2FB_DICDI 32 276 + 245 Gaps:44 90.04 241 30.41 2e-13 General transcription factor IIF subunit 2 OS Dictyostelium discoideum GN gtf2f2 PE 3 SV 2
blastp_uniprot_sprot sp|P41896|T2FB_YEAST 207 281 + 75 none 18.75 400 34.67 9e-06 Transcription initiation factor IIF subunit beta OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TFG2 PE 1 SV 2
rpsblast_cdd gnl|CDD|202183 30 277 + 248 Gaps:50 98.84 259 28.52 2e-40 pfam02270 TFIIF_beta Transcription initiation factor IIF beta subunit. Accurate transcription in vivo requires at least six general transcription initiation factors in addition to RNA polymerase II. Transcription initiation factor IIF (TFIIF) is a tetramer of two beta subunits associate with two alpha subunits which interacts directly with RNA polymerase II. The beta subunit of TFIIF is required for recruitment of RNA polymerase II onto the promoter.
rpsblast_cdd gnl|CDD|34693 101 281 + 181 Gaps:8 61.62 297 28.42 5e-20 COG5090 TFG2 Transcription initiation factor IIF small subunit (RAP30) [Transcription].
rpsblast_kog gnl|CDD|38116 30 283 + 254 Gaps:15 94.88 254 38.17 6e-58 KOG2905 KOG2905 KOG2905 Transcription initiation factor IIF small subunit (RAP30) [Transcription].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 30 281 252 PTHR10445:SF0 none none none
PANTHER 30 281 252 PTHR10445 none none IPR003196
SUPERFAMILY 29 146 118 SSF50916 "Reactome:REACT_1675","Reactome:REACT_1788","Reactome:REACT_1892","Reactome:REACT_6185","Reactome:REACT_71","Reactome:REACT_769" none IPR011039
Gene3D 211 277 67 G3DSA:1.10.10.10 none none IPR011991
SUPERFAMILY 211 277 67 SSF46785 none none none
Pfam 30 130 101 PF02270 none Transcription initiation factor IIF, beta subunit IPR003196
Pfam 127 277 151 PF02270 none Transcription initiation factor IIF, beta subunit IPR003196

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting