Protein : Qrob_P0454810.2 Q. robur
Protein Identifier  ? Qrob_P0454810.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K02973 - small subunit ribosomal protein S23e Gene Prediction Quality  validated
Protein length 

Sequence

Length: 143  
Kegg Orthology  K02973
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sot:102577739 1 142 + 142 none 100.00 142 100.00 2e-97 uncharacterized LOC102577739
blastp_kegg lcl|sot:102589849 1 142 + 142 none 100.00 142 100.00 2e-97 40S ribosomal protein S23-like
blastp_kegg lcl|sot:102582696 1 142 + 142 none 100.00 142 100.00 2e-97 40S ribosomal protein S23-like
blastp_kegg lcl|sot:102606349 1 142 + 142 none 100.00 142 100.00 2e-97 40S ribosomal protein S23-like
blastp_kegg lcl|sly:101252449 1 142 + 142 none 100.00 142 100.00 2e-97 40S ribosomal protein S23-like
blastp_kegg lcl|sly:101252131 1 142 + 142 none 100.00 142 100.00 2e-97 40S ribosomal protein S23-like
blastp_kegg lcl|sly:101257002 1 142 + 142 none 100.00 142 100.00 2e-97 40S ribosomal protein S23-like
blastp_kegg lcl|cic:CICLE_v10029532mg 1 142 + 142 none 100.00 142 100.00 2e-97 hypothetical protein
blastp_kegg lcl|cit:102627205 1 142 + 142 none 100.00 142 100.00 2e-97 40S ribosomal protein S23-like
blastp_kegg lcl|cmo:103501915 1 142 + 142 none 100.00 142 99.30 7e-97 40S ribosomal protein S23
blastp_pdb 3iz6_L 1 142 + 142 none 100.00 142 96.48 7e-97 mol:protein length:142 40S ribosomal protein S23 (S12p)
blastp_pdb 2zkq_l 1 142 + 142 Gaps:1 100.00 143 79.72 7e-79 mol:protein length:143 40S Ribosomal protein S23e
blastp_pdb 3u5g_X 2 142 + 141 Gaps:1 97.93 145 77.46 3e-74 mol:protein length:145 40S ribosomal protein S23-A
blastp_pdb 3u5c_X 2 142 + 141 Gaps:1 97.93 145 77.46 3e-74 mol:protein length:145 40S ribosomal protein S23-A
blastp_pdb 3o30_P 2 142 + 141 Gaps:1 97.93 145 77.46 3e-74 mol:protein length:145 40S ribosomal protein S23
blastp_pdb 3o2z_P 2 142 + 141 Gaps:1 97.93 145 77.46 3e-74 mol:protein length:145 40S ribosomal protein S23
blastp_pdb 3izb_L 2 142 + 141 Gaps:1 97.93 145 77.46 3e-74 mol:protein length:145 40S ribosomal protein rpS23 (S12p)
blastp_pdb 2xzn_L 1 139 + 139 none 97.89 142 71.94 5e-68 mol:protein length:142 40S RIBOSOMAL PROTEIN S12
blastp_pdb 2xzm_L 1 139 + 139 none 97.89 142 71.94 5e-68 mol:protein length:142 40S RIBOSOMAL PROTEIN S12
blastp_pdb 3j0q_L 1 139 + 139 none 98.58 141 71.94 8e-68 mol:protein length:141 Ribosomal protein S23
blastp_uniprot_sprot sp|P46297|RS23_FRAAN 1 142 + 142 none 100.00 142 98.59 2e-97 40S ribosomal protein S23 OS Fragaria ananassa GN RPS23 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M5Z9|RS23_EUPES 1 142 + 142 none 100.00 142 97.89 2e-96 40S ribosomal protein S23 OS Euphorbia esula GN RPS23 PE 2 SV 1
blastp_uniprot_sprot sp|P49201|RS232_ARATH 1 142 + 142 none 100.00 142 96.48 1e-93 40S ribosomal protein S23-2 OS Arabidopsis thaliana GN RPS23B PE 2 SV 2
blastp_uniprot_sprot sp|Q9SF35|RS231_ARATH 1 142 + 142 none 100.00 142 94.37 2e-90 40S ribosomal protein S23-1 OS Arabidopsis thaliana GN RPS23A PE 2 SV 2
blastp_uniprot_sprot sp|Q9GRJ3|RS23_LUMRU 1 142 + 142 Gaps:1 100.00 143 81.12 2e-80 40S ribosomal protein S23 OS Lumbricus rubellus GN RPS23 PE 2 SV 1
blastp_uniprot_sprot sp|Q86FP7|RS23_DERVA 1 142 + 142 Gaps:1 100.00 143 81.12 5e-80 40S ribosomal protein S23 OS Dermacentor variabilis GN RpS23 PE 2 SV 1
blastp_uniprot_sprot sp|Q8T3U2|RS23_DROME 1 142 + 142 Gaps:1 100.00 143 80.42 2e-78 40S ribosomal protein S23 OS Drosophila melanogaster GN RpS23 PE 1 SV 1
blastp_uniprot_sprot sp|Q962Q7|RS23_SPOFR 1 142 + 142 Gaps:1 100.00 143 79.02 2e-78 40S ribosomal protein S23 OS Spodoptera frugiperda GN RpS23 PE 2 SV 1
blastp_uniprot_sprot sp|Q6EV23|RS23_PAPDA 1 142 + 142 Gaps:1 100.00 143 79.02 2e-78 40S ribosomal protein S23 OS Papilio dardanus GN RpS23 PE 2 SV 1
blastp_uniprot_sprot sp|P62268|RS23_RAT 1 142 + 142 Gaps:1 100.00 143 79.72 3e-78 40S ribosomal protein S23 OS Rattus norvegicus GN Rps23 PE 1 SV 3

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 6 141 136 TIGR00982 none uS12_E_A: ribosomal protein uS12 IPR005680
Gene3D 20 140 121 G3DSA:2.40.50.140 none none IPR012340
Pfam 10 141 132 PF00164 none Ribosomal protein S12/S23 IPR006032
PANTHER 1 142 142 PTHR11652 none none IPR006032
SUPERFAMILY 20 140 121 SSF50249 none none IPR012340
ProSitePatterns 59 66 8 PS00055 none Ribosomal protein S12 signature. IPR006032
PIRSF 16 142 127 PIRSF002133 none none IPR006032

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9

0 Targeting