Protein : Qrob_P0454030.2 Q. robur
Protein Identifier  ? Qrob_P0454030.2 Organism . Name  Quercus robur
Score  95.6 Score Type  egn
Protein Description  (M=3) PF03595 - Voltage-dependent anion channel Gene Prediction Quality  validated
Protein length 

Sequence

Length: 388  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0008308 voltage-gated anion channel activity Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
GO:0006873 cellular ion homeostasis Any process involved in the maintenance of an internal steady state of ions at the level of a cell.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102624487 3 381 + 379 Gaps:2 91.37 417 70.08 5e-170 S-type anion channel SLAH1-like
blastp_kegg lcl|cic:CICLE_v10003716mg 32 376 + 345 Gaps:2 99.71 348 72.91 2e-161 hypothetical protein
blastp_kegg lcl|tcc:TCM_034146 1 386 + 386 Gaps:2 94.87 409 66.75 4e-159 SLAC1
blastp_kegg lcl|vvi:100266155 5 382 + 378 Gaps:8 99.46 372 65.41 4e-156 S-type anion channel SLAH1-like
blastp_kegg lcl|vvi:100253353 6 382 + 377 Gaps:9 95.85 386 69.19 4e-155 S-type anion channel SLAH1-like
blastp_kegg lcl|vvi:100260675 1 381 + 381 Gaps:7 96.14 389 65.24 5e-154 S-type anion channel SLAH1-like
blastp_kegg lcl|cmo:103503902 1 378 + 378 Gaps:10 94.85 388 63.32 6e-150 S-type anion channel SLAH4-like
blastp_kegg lcl|cic:CICLE_v10017595mg 7 373 + 367 Gaps:3 97.60 375 64.21 5e-149 hypothetical protein
blastp_kegg lcl|cit:102629061 7 373 + 367 Gaps:3 92.42 396 64.21 1e-148 S-type anion channel SLAH1-like
blastp_kegg lcl|sly:101246923 3 375 + 373 Gaps:10 92.21 398 62.67 2e-145 S-type anion channel SLAH1-like
blastp_uniprot_sprot sp|Q5E930|SLAH1_ARATH 9 378 + 370 Gaps:8 94.55 385 55.77 4e-131 S-type anion channel SLAH1 OS Arabidopsis thaliana GN SLAH1 PE 2 SV 1
blastp_uniprot_sprot sp|A8MRV9|SLAH4_ARATH 44 373 + 330 Gaps:10 87.67 365 58.75 5e-125 S-type anion channel SLAH4 OS Arabidopsis thaliana GN SLAH4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LD83|SLAC1_ARATH 48 363 + 316 Gaps:14 55.76 556 46.45 4e-71 Guard cell S-type anion channel SLAC1 OS Arabidopsis thaliana GN SLAC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FLV9|SLAH3_ARATH 48 363 + 316 Gaps:25 48.35 635 42.67 1e-70 S-type anion channel SLAH3 OS Arabidopsis thaliana GN SLAH3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ASQ7|SLAH2_ARATH 48 385 + 338 Gaps:13 63.78 519 41.39 1e-69 S-type anion channel SLAH2 OS Arabidopsis thaliana GN SLAH2 PE 2 SV 1
rpsblast_cdd gnl|CDD|187763 51 362 + 312 Gaps:16 99.66 297 34.80 5e-71 cd09323 TDT_SLAC1_like Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes SLAC1 (Slow Anion Channel-Associated 1). SLAC1 (Slow Anion Channel-Associated 1) is a plasma membrane protein preferentially expressed in guard cells which encodes a distant homolog of fungal and bacterial dicarboxylate/malic acid transport proteins. It is essential for stomatal closure in response to carbon dioxide abscisic acid ozone light/dark transitions humidity change calcium ions hydrogen peroxide and nitric oxide. In the Arabidopsis genome SLAC1 is part of a gene family with five members and encodes a membrane protein that has ten putative transmembrane domains flanked by large N- and C-terminal domains. Mutations in SLAC1 impair slow (S-type) anion channel currents that are activated by cytosolic calcium ions and abscisic acid but do not affect rapid (R-type) anion channel currents or calcium ion channel function.
rpsblast_cdd gnl|CDD|187762 55 359 + 305 Gaps:18 100.00 289 29.07 2e-45 cd09322 TDT_TehA_like The Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes TehA proteins. The Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes members from all three kingdoms but only three members of the family have been functionally characterized: the TehA protein of E. coli functioning as a tellurite-resistance uptake permease the Mae1 protein of S. pombe functioning in the uptake of malate and other dicarboxylates and the sulfite efflux pump (SSU1) of Saccharomyces cerevisiae. In plants the plasma membrane protein SLAC1 (Slow Anion Channel-Associated 1) which is preferentially expressed in guard cells encodes a distant homolog of fungal and bacterial dicarboxylate/malic acid transport proteins. SLAC1 is essential in mediating stomatal responses to physiological and stress stimuli. Members of the TDT family exhibit 10 putative transmembrane a-helical spanners (TMSs).
rpsblast_cdd gnl|CDD|202696 49 363 + 315 Gaps:24 99.68 314 28.43 3e-34 pfam03595 C4dic_mal_tran C4-dicarboxylate transporter/malic acid transport protein. This family of transporters have ten alpha helical transmembrane segments. The structure of a bacterial homologue of SLAC1 shows it to have a trimeric arrangement. The pore is composed of five helices with a conserved phe residue involved in gating. One homologue Mae1 from the yeast Schizosaccharomyces pombe functions as a malate uptake transporter another Ssu1 from Saccharomyces cerevisiae and other fungi including Aspergillus fumigatus is characterized as a sulphite efflux pump and TehA from Escherichia coli is identified as a tellurite resistance protein by virtue of its association in the tehA/tehB operon. Many homologues are incorrectly annotated as tellurite resistance/dicarboxylate transporter (TDT) proteins.
rpsblast_cdd gnl|CDD|187764 53 363 + 311 Gaps:39 98.34 301 26.01 4e-13 cd09324 TDT_TehA Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes TehA protein. This subfamily includes Tellurite resistance protein TehA that belongs to the C4-dicarboxylate transporter/malic acid transport (TDT) protein family and is a homolog of plant Slow Anion Channel-Associated 1 (SLAC1). The tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.
rpsblast_cdd gnl|CDD|182709 53 363 + 311 Gaps:63 91.36 324 27.70 1e-12 PRK10764 PRK10764 potassium-tellurite ethidium and proflavin transporter Provisional.
rpsblast_cdd gnl|CDD|188085 96 362 + 267 Gaps:20 87.19 320 21.15 5e-10 TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. The Tellurite-Resistance/Dicarboxylate Transporter (TDT) Family (TC 2.A.16)Two members of the TDT family have been functionally characterized. One is the TehA protein of E. coli which has been implicated in resistance to tellurite the other is the Mae1 protein of S. pombe which functions in the uptake of malate and other dicarboxylates by a proton symportmechanism. These proteins exhibit 10 putative transmembrane a-helicalspanners (TMSs).
rpsblast_cdd gnl|CDD|31466 91 360 + 270 Gaps:7 82.37 329 24.72 3e-09 COG1275 TehA Tellurite resistance protein and related permeases [Inorganic ion transport and metabolism].
rpsblast_cdd gnl|CDD|187761 95 366 + 272 Gaps:33 89.60 327 20.14 8e-07 cd09321 TDT_like_3 The Tellurite-resistance/Dicarboxylate Transporter (TDT) family. The Tellurite-resistance/Dicarboxylate Transporter (TDT) family includes members from all three kingdoms but only three members of the family have been functionally characterized: the TehA protein of E. coli functioning as a tellurite-resistance uptake permease the Mae1 protein of S. pombe functioning in the uptake of malate and other dicarboxylates and the sulfite efflux pump (SSU1) of Saccharomyces cerevisiae. In plants the plasma membrane protein SLAC1 (Slow Anion Channel-Associated 1) which is preferentially expressed in guard cells encodes a distant homolog of fungal and bacterial dicarboxylate/malic acid transport proteins. SLAC1 is essential in mediating stomatal responses to physiological and stress stimuli. Members of the TDT family exhibit 10 putative transmembrane a-helical spanners (TMSs).

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 252 274 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 135 154 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 310 327 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 218 222 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 160 179 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 365 387 23 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 54 72 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 73 91 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 241 251 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 115 134 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 180 199 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 53 53 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 92 114 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 200 217 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 46 376 331 PTHR31269 none none IPR030183
Phobius 223 240 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 275 279 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 50 363 314 PF03595 none Voltage-dependent anion channel IPR004695
Phobius 155 159 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 46 376 331 PTHR31269:SF4 none none none
Phobius 280 298 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 299 309 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 339 364 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 328 338 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

9 Localization

Analysis Start End Length
TMHMM 252 274 22
TMHMM 222 239 17
TMHMM 342 364 22
TMHMM 92 114 22
TMHMM 127 146 19
TMHMM 284 303 19
TMHMM 161 183 22
TMHMM 190 212 22
TMHMM 310 332 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting