Protein : Qrob_P0451620.2 Q. robur
Protein Identifier  ? Qrob_P0451620.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K02900 - large subunit ribosomal protein L27Ae Gene Prediction Quality  validated
Protein length 

Sequence

Length: 147  
Kegg Orthology  K02900
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015934 large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa012994mg 1 146 + 146 none 100.00 146 91.10 5e-95 hypothetical protein
blastp_kegg lcl|pxb:103949827 1 146 + 146 none 100.00 146 91.10 6e-95 60S ribosomal protein L27a-3
blastp_kegg lcl|cmo:103488974 1 146 + 146 none 100.00 146 90.41 9e-95 60S ribosomal protein L27a-3
blastp_kegg lcl|csv:101229708 1 146 + 146 none 100.00 146 90.41 9e-95 60S ribosomal protein L27a-3-like
blastp_kegg lcl|csv:101221117 1 146 + 146 none 100.00 146 90.41 9e-95 60S ribosomal protein L27a-3-like
blastp_kegg lcl|cmo:103483791 1 146 + 146 none 100.00 146 91.78 1e-94 60S ribosomal protein L27a-3-like
blastp_kegg lcl|pmum:103321851 1 146 + 146 none 100.00 146 90.41 2e-94 60S ribosomal protein L27a-3
blastp_kegg lcl|gmx:100527293 1 146 + 146 none 100.00 146 91.10 2e-94 uncharacterized LOC100527293
blastp_kegg lcl|cit:102618706 1 146 + 146 none 100.00 146 91.78 3e-94 60S ribosomal protein L27a-3-like
blastp_kegg lcl|pop:POPTR_0016s06950g 1 146 + 146 none 100.00 146 90.41 3e-94 hypothetical protein
blastp_pdb 3izr_O 1 146 + 146 Gaps:2 100.00 144 82.64 5e-80 mol:protein length:144 60S ribosomal protein L27a (L15p)
blastp_pdb 2zkr_l 1 146 + 146 Gaps:4 100.00 148 66.22 1e-63 mol:protein length:148 60S Ribosomal protein L27a
blastp_pdb 3u5i_a 1 146 + 146 Gaps:5 100.00 149 65.10 6e-63 mol:protein length:149 60S ribosomal protein L28
blastp_pdb 3u5e_a 1 146 + 146 Gaps:5 100.00 149 65.10 6e-63 mol:protein length:149 60S ribosomal protein L28
blastp_pdb 3izs_O 1 146 + 146 Gaps:5 100.00 149 65.10 6e-63 mol:protein length:149 60S ribosomal protein rpL28 (L15p)
blastp_pdb 3o5h_Y 1 146 + 146 Gaps:5 100.00 149 65.10 9e-63 mol:protein length:149 60S ribosomal protein L28
blastp_pdb 3o58_Y 1 146 + 146 Gaps:5 100.00 149 65.10 9e-63 mol:protein length:149 60S ribosomal protein L28
blastp_pdb 1s1i_V 3 146 + 144 Gaps:5 99.32 148 65.31 5e-62 mol:protein length:148 60S ribosomal protein L28
blastp_pdb 3jyw_V 7 144 + 138 Gaps:6 98.59 142 65.71 4e-57 mol:protein length:142 60S ribosomal protein L28
blastp_pdb 4a1e_K 1 146 + 146 Gaps:5 100.00 149 61.74 1e-52 mol:protein length:149 60S RIBOSOMAL PROTEIN L27A
blastp_uniprot_sprot sp|P49637|R27A3_ARATH 1 146 + 146 none 100.00 146 86.99 3e-89 60S ribosomal protein L27a-3 OS Arabidopsis thaliana GN RPL27AC PE 2 SV 2
blastp_uniprot_sprot sp|Q9LR33|R27A2_ARATH 1 146 + 146 none 100.00 146 85.62 2e-87 60S ribosomal protein L27a-2 OS Arabidopsis thaliana GN RPL27AB PE 2 SV 1
blastp_uniprot_sprot sp|P48160|RL27A_DICDI 1 146 + 146 Gaps:4 100.00 148 66.89 2e-66 60S ribosomal protein L27a OS Dictyostelium discoideum GN rpl27a PE 3 SV 1
blastp_uniprot_sprot sp|Q56K03|RL27A_BOVIN 1 146 + 146 Gaps:4 100.00 148 67.57 1e-64 60S ribosomal protein L27a OS Bos taurus GN RPL27A PE 2 SV 3
blastp_uniprot_sprot sp|P18445|RL27A_RAT 1 146 + 146 Gaps:4 100.00 148 67.57 3e-64 60S ribosomal protein L27a OS Rattus norvegicus GN Rpl27a PE 1 SV 3
blastp_uniprot_sprot sp|P14115|RL27A_MOUSE 1 146 + 146 Gaps:4 100.00 148 67.57 3e-64 60S ribosomal protein L27a OS Mus musculus GN Rpl27a PE 2 SV 5
blastp_uniprot_sprot sp|Q4R723|RL27A_MACFA 1 146 + 146 Gaps:4 100.00 148 66.89 4e-64 60S ribosomal protein L27a OS Macaca fascicularis GN RPL27A PE 2 SV 1
blastp_uniprot_sprot sp|Q5REY2|RL27A_PONAB 1 146 + 146 Gaps:4 100.00 148 66.22 5e-64 60S ribosomal protein L27a OS Pongo abelii GN RPL27A PE 2 SV 3
blastp_uniprot_sprot sp|P46776|RL27A_HUMAN 1 146 + 146 Gaps:4 100.00 148 66.22 5e-64 60S ribosomal protein L27a OS Homo sapiens GN RPL27A PE 1 SV 2
blastp_uniprot_sprot sp|Q5R1X0|RL27A_PANTR 1 146 + 146 Gaps:4 100.00 148 65.54 3e-63 60S ribosomal protein L27a OS Pan troglodytes GN RPL27A PE 2 SV 3

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 146 146 PTHR11721:SF3 none none none
Gene3D 26 144 119 G3DSA:3.100.10.10 none none none
Hamap 1 145 145 MF_01341 none 50S ribosomal protein L15 [rplO]. IPR030878
SUPERFAMILY 6 145 140 SSF52080 none none IPR021131
ProSitePatterns 107 139 33 PS00475 none Ribosomal protein L15 signature. IPR001196
PANTHER 1 146 146 PTHR11721 none none none
Pfam 20 144 125 PF00828 none Ribosomal protein L18e/L15 IPR021131

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting