Protein : Qrob_P0447930.2 Q. robur
Protein Identifier  ? Qrob_P0447930.2 Organism . Name  Quercus robur
Score  41.1 Score Type  egn
Protein Description  (M=1) K17496 - mitochondrial import inner membrane translocase subunit TIM50 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 344  
Kegg Orthology  K17496
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0005743 mitochondrial inner membrane The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
GO:0005744 mitochondrial inner membrane presequence translocase complex The protein transport machinery of the mitochondrial inner membrane that contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103342727 3 342 + 340 Gaps:51 98.90 363 57.94 7e-133 mitochondrial import inner membrane translocase subunit TIM50
blastp_kegg lcl|pvu:PHAVU_008G278100g 73 324 + 252 Gaps:33 85.59 333 65.61 1e-132 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa007559mg 3 342 + 340 Gaps:49 98.90 363 57.10 2e-131 hypothetical protein
blastp_kegg lcl|gmx:100775411 83 324 + 242 Gaps:33 82.09 335 67.27 8e-131 mitochondrial import inner membrane translocase subunit TIM50-like
blastp_kegg lcl|gmx:100803155 83 324 + 242 Gaps:33 82.58 333 67.27 1e-130 mitochondrial import inner membrane translocase subunit TIM50-like
blastp_kegg lcl|cam:101509691 83 324 + 242 Gaps:33 82.09 335 66.55 8e-129 mitochondrial import inner membrane translocase subunit TIM50-like
blastp_kegg lcl|mtr:MTR_5g095530 83 324 + 242 Gaps:33 73.53 374 66.55 3e-128 Mitochondrial import inner membrane translocase subunit TIM50
blastp_kegg lcl|cmo:103501237 3 342 + 340 Gaps:69 98.89 359 57.18 1e-127 mitochondrial import inner membrane translocase subunit TIM50
blastp_kegg lcl|cic:CICLE_v10010336mg 3 324 + 322 Gaps:56 98.31 354 57.18 3e-125 hypothetical protein
blastp_kegg lcl|sot:102600826 1 342 + 342 Gaps:52 99.16 359 55.90 3e-124 mitochondrial import inner membrane translocase subunit TIM50-like
blastp_pdb 3qle_A 192 324 + 133 Gaps:37 81.37 204 33.73 6e-23 mol:protein length:204 Tim50p
blastp_uniprot_sprot sp|Q8VYE2|TIM50_ARATH 3 324 + 322 Gaps:49 94.41 376 50.14 5e-103 Mitochondrial import inner membrane translocase subunit TIM50 OS Arabidopsis thaliana GN TIM50 PE 1 SV 1
blastp_uniprot_sprot sp|Q4I099|TIM50_GIBZE 166 326 + 161 Gaps:34 36.76 525 37.31 5e-34 Mitochondrial import inner membrane translocase subunit TIM50 OS Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN TIM50 PE 3 SV 1
blastp_uniprot_sprot sp|Q874C1|TIM50_NEUCR 168 329 + 162 Gaps:34 35.93 540 36.08 3e-32 Mitochondrial import inner membrane translocase subunit tim-50 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN tim-50 PE 1 SV 1
blastp_uniprot_sprot sp|Q5B4P0|TIM50_EMENI 171 329 + 159 Gaps:34 35.90 532 36.13 1e-30 Mitochondrial import inner membrane translocase subunit tim50 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN tim50 PE 3 SV 1
blastp_uniprot_sprot sp|Q4WI16|TIM50_ASPFU 171 325 + 155 Gaps:34 37.33 501 35.83 4e-30 Mitochondrial import inner membrane translocase subunit tim50 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN tim50 PE 3 SV 2
blastp_uniprot_sprot sp|O13636|TIM50_SCHPO 171 337 + 167 Gaps:36 44.47 452 34.83 4e-29 Mitochondrial import inner membrane translocase subunit tim50 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN tim50 PE 3 SV 1
blastp_uniprot_sprot sp|Q6CDV7|TIM50_YARLI 156 329 + 174 Gaps:40 44.64 466 33.65 2e-28 Mitochondrial import inner membrane translocase subunit TIM50 OS Yarrowia lipolytica (strain CLIB 122 / E 150) GN TIM50 PE 3 SV 1
blastp_uniprot_sprot sp|Q5S7T7|TIM50_PHYIN 155 313 + 159 Gaps:37 47.92 409 35.71 3e-28 Mitochondrial import inner membrane translocase subunit TIM50 OS Phytophthora infestans GN TIM50 PE 2 SV 1
blastp_uniprot_sprot sp|Q4PEW9|TIM50_USTMA 171 329 + 159 Gaps:36 39.15 493 32.12 3e-27 Mitochondrial import inner membrane translocase subunit TIM50 OS Ustilago maydis (strain 521 / FGSC 9021) GN TIM50 PE 3 SV 1
blastp_uniprot_sprot sp|Q6BVY9|TIM50_DEBHA 23 329 + 307 Gaps:73 66.67 471 30.57 3e-26 Mitochondrial import inner membrane translocase subunit TIM50 OS Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN TIM50 PE 3 SV 1
rpsblast_cdd gnl|CDD|202514 191 306 + 116 Gaps:43 100.00 153 29.41 5e-25 pfam03031 NIF NLI interacting factor-like phosphatase. This family contains a number of NLI interacting factor isoforms and also an N-terminal regions of RNA polymerase II CTC phosphatase and FCP1 serine phosphatase. This region has been identified as the minimal phosphatase domain.
rpsblast_cdd gnl|CDD|162785 191 295 + 105 Gaps:51 95.06 162 29.22 4e-15 TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This model represents the putative phosphatase domain of a family of eukaryotic proteins including "Dullard" and the NLI interacting factor (NIF)-like phosphatases. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDNxPxxa) and aparrently lacking the last aspartate. This domain is classified as a "Class III" HAD since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3. This domain is related to domains found in FCP1-like phosphatases (TIGR02250) and together both are detected by the Pfam model pfam03031.
rpsblast_cdd gnl|CDD|197796 191 285 + 95 Gaps:59 98.65 148 30.82 6e-15 smart00577 CPDc catalytic domain of ctd-like phosphatases.
rpsblast_kog gnl|CDD|38043 68 327 + 260 Gaps:48 77.86 393 33.33 2e-45 KOG2832 KOG2832 KOG2832 TFIIF-interacting CTD phosphatase including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 165 325 161 PTHR12210:SF3 none none IPR027111
SUPERFAMILY 178 310 133 SSF56784 none none IPR023214
Gene3D 181 239 59 G3DSA:3.40.50.1000 none none IPR023214
Gene3D 242 310 69 G3DSA:3.40.50.1000 none none IPR023214
SMART 189 284 96 SM00577 none catalytic domain of ctd-like phosphatases IPR004274
ProSiteProfiles 186 343 158 PS50969 none FCP1 homology domain profile. IPR004274
Pfam 243 306 64 PF03031 none NLI interacting factor-like phosphatase IPR004274
Pfam 192 240 49 PF03031 none NLI interacting factor-like phosphatase IPR004274
PANTHER 165 325 161 PTHR12210 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting