Protein : Qrob_P0446450.2 Q. robur
Protein Identifier  ? Qrob_P0446450.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) PTHR10639 - CLATHRIN LIGHT CHAIN Gene Prediction Quality  validated
Protein length 

Sequence

Length: 349  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0005198 structural molecule activity The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell.
GO:0030130 clathrin coat of trans-Golgi network vesicle A clathrin coat found on a vesicle of the trans-Golgi network.
GO:0030132 clathrin coat of coated pit The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103328564 1 348 + 348 Gaps:103 100.00 421 52.97 5e-116 clathrin light chain 1
blastp_kegg lcl|pper:PRUPE_ppa024765mg 1 294 + 294 Gaps:38 73.93 422 63.14 5e-114 hypothetical protein
blastp_kegg lcl|fve:101299389 1 348 + 348 Gaps:48 95.91 367 59.09 9e-107 clathrin light chain 1-like
blastp_kegg lcl|tcc:TCM_008075 1 340 + 340 Gaps:47 97.75 355 59.08 2e-96 Clathrin light chain protein putative
blastp_kegg lcl|cmo:103490517 1 294 + 294 Gaps:27 75.90 415 63.17 1e-95 clathrin light chain 1
blastp_kegg lcl|mdm:103412735 1 348 + 348 Gaps:85 100.00 423 50.59 2e-95 clathrin light chain 1-like
blastp_kegg lcl|vvi:100854215 1 346 + 346 Gaps:43 99.47 375 54.42 6e-95 clathrin light chain 1-like
blastp_kegg lcl|pxb:103934611 1 348 + 348 Gaps:85 100.00 423 50.35 2e-93 clathrin light chain 1-like
blastp_kegg lcl|csv:101206854 1 264 + 264 Gaps:26 84.12 340 59.44 3e-93 clathrin light chain 1-like
blastp_kegg lcl|cam:101494699 57 340 + 284 Gaps:24 91.25 320 62.33 5e-93 clathrin light chain 1-like
blastp_uniprot_sprot sp|Q9SKU1|CLC1_ARATH 83 342 + 260 Gaps:13 76.04 338 64.20 5e-79 Clathrin light chain 1 OS Arabidopsis thaliana GN At2g20760 PE 2 SV 1
blastp_uniprot_sprot sp|O04209|CLC2_ARATH 80 270 + 191 Gaps:14 70.93 258 61.20 3e-60 Clathrin light chain 2 OS Arabidopsis thaliana GN CLC2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5Z402|CLC2_ORYSJ 86 289 + 204 Gaps:5 71.13 291 62.32 2e-57 Clathrin light chain 2 OS Oryza sativa subsp. japonica GN Os06g0731800 PE 2 SV 1
blastp_uniprot_sprot sp|F4J5M9|CLC3_ARATH 16 278 + 263 Gaps:41 90.70 258 53.42 2e-57 Clathrin light chain 3 OS Arabidopsis thaliana GN At3g51890 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XKE9|CLC1_ORYSJ 118 264 + 147 Gaps:2 48.84 301 73.47 1e-56 Clathrin light chain 1 OS Oryza sativa subsp. japonica GN Os04g0679100 PE 2 SV 1
blastp_uniprot_sprot sp|Q6Z3A8|CLC3_ORYSJ 118 289 + 172 Gaps:9 49.86 363 63.54 9e-56 Clathrin light chain 3 OS Oryza sativa subsp. japonica GN Os07g0461500 PE 3 SV 1
blastp_uniprot_sprot sp|P04975|CLCB_BOVIN 78 266 + 189 Gaps:40 82.02 228 29.41 2e-06 Clathrin light chain B OS Bos taurus GN CLTB PE 1 SV 1
blastp_uniprot_sprot sp|P08082|CLCB_RAT 78 266 + 189 Gaps:41 82.10 229 29.79 9e-06 Clathrin light chain B OS Rattus norvegicus GN Cltb PE 1 SV 1
rpsblast_cdd gnl|CDD|189835 70 265 + 196 Gaps:28 77.33 225 27.59 1e-07 pfam01086 Clathrin_lg_ch Clathrin light chain.

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 126 266 141 PF01086 "Reactome:REACT_11123" Clathrin light chain IPR000996
PANTHER 72 295 224 PTHR10639:SF7 none none none
PANTHER 72 295 224 PTHR10639 "Reactome:REACT_11123";signature_desc=CLATHRIN LIGHT CHAIN none IPR000996
Coils 135 167 33 Coil none none none

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting