Protein : Qrob_P0446210.2 Q. robur
Protein Identifier  ? Qrob_P0446210.2 Organism . Name  Quercus robur
Score  87.3 Score Type  egn
Protein Description  (M=2) KOG0116//KOG0921//KOG1596 - RasGAP SH3 binding protein rasputin contains NTF2 and RRM domains [Signal transduction mechanisms]. // Dosage compensation complex subunit MLE [Transcription]. // Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]. Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 257  
Kegg Orthology  K14563
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0008168 methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
GO:0006364 rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO:0008033 tRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa010543mg 67 238 + 172 Gaps:7 71.43 245 81.14 1e-95 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1582870 67 238 + 172 Gaps:6 71.26 247 79.55 1e-93 fibrillarin putative (EC:2.7.11.1)
blastp_kegg lcl|pper:PRUPE_ppa009013mg 71 238 + 168 Gaps:7 55.16 310 81.87 3e-93 hypothetical protein
blastp_kegg lcl|pmum:103336123 71 238 + 168 Gaps:7 55.16 310 81.87 3e-93 mediator of RNA polymerase II transcription subunit 36a-like
blastp_kegg lcl|pop:POPTR_0015s12790g 72 238 + 167 Gaps:7 55.56 306 82.35 2e-92 POPTRDRAFT_808268 hypothetical protein
blastp_kegg lcl|pmum:103335417 71 238 + 168 Gaps:7 54.46 314 81.29 2e-92 probable mediator of RNA polymerase II transcription subunit 36b
blastp_kegg lcl|pop:POPTR_0012s12860g 71 238 + 168 Gaps:7 55.34 309 80.70 3e-92 POPTRDRAFT_823462 hypothetical protein
blastp_kegg lcl|mdm:103442968 71 238 + 168 Gaps:7 54.98 311 81.29 1e-91 mediator of RNA polymerase II transcription subunit 36a-like
blastp_kegg lcl|mdm:103406558 71 238 + 168 Gaps:7 54.98 311 81.29 1e-91 mediator of RNA polymerase II transcription subunit 36a-like
blastp_kegg lcl|mtr:MTR_053s1051 67 238 + 172 Gaps:7 55.91 313 77.71 3e-91 Fibrillarin
blastp_pdb 2ipx_A 70 232 + 163 Gaps:3 68.67 233 76.25 8e-81 mol:protein length:233 rRNA 2'-O-methyltransferase fibrillarin
blastp_pdb 1pry_A 78 232 + 155 Gaps:7 66.08 227 53.33 5e-43 mol:protein length:227 Fibrillarin-like pre-rRNA processing protein
blastp_pdb 3nvm_B 78 232 + 155 Gaps:7 64.10 234 53.33 7e-43 mol:protein length:234 Fibrillarin-like rRNA/tRNA 2'-O-methyltransfe
blastp_pdb 3nvk_J 78 232 + 155 Gaps:7 64.10 234 53.33 7e-43 mol:protein length:234 Fibrillarin-like rRNA/tRNA 2'-O-methyltransfe
blastp_pdb 3nvk_I 78 232 + 155 Gaps:7 64.10 234 53.33 7e-43 mol:protein length:234 Fibrillarin-like rRNA/tRNA 2'-O-methyltransfe
blastp_pdb 3nmu_J 78 232 + 155 Gaps:7 64.10 234 53.33 7e-43 mol:protein length:234 Fibrillarin-like rRNA/tRNA 2'-O-methyltransfe
blastp_pdb 3nmu_F 78 232 + 155 Gaps:7 64.10 234 53.33 7e-43 mol:protein length:234 Fibrillarin-like rRNA/tRNA 2'-O-methyltransfe
blastp_pdb 2nnw_D 78 232 + 155 Gaps:7 64.10 234 53.33 7e-43 mol:protein length:234 Fibrillarin-like rRNA/tRNA 2'-O-methyltransfe
blastp_pdb 2nnw_B 78 232 + 155 Gaps:7 64.10 234 53.33 7e-43 mol:protein length:234 Fibrillarin-like rRNA/tRNA 2'-O-methyltransfe
blastp_pdb 1g8a_A 78 232 + 155 Gaps:7 66.08 227 52.00 6e-42 mol:protein length:227 FIBRILLARIN-LIKE PRE-RRNA PROCESSING PROTEIN
blastp_uniprot_sprot sp|Q9FEF8|MD36B_ARATH 67 256 + 190 Gaps:21 65.26 308 70.65 1e-91 Probable mediator of RNA polymerase II transcription subunit 36b OS Arabidopsis thaliana GN MED36B PE 1 SV 1
blastp_uniprot_sprot sp|Q94AH9|MD36A_ARATH 67 238 + 172 Gaps:7 54.69 320 77.14 3e-91 Mediator of RNA polymerase II transcription subunit 36a OS Arabidopsis thaliana GN MED36A PE 1 SV 2
blastp_uniprot_sprot sp|P35551|FBRL_SCHPO 72 232 + 161 Gaps:2 52.13 305 75.47 7e-81 rRNA 2'-O-methyltransferase fibrillarin OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN fib1 PE 1 SV 1
blastp_uniprot_sprot sp|P35550|FBRL_MOUSE 68 232 + 165 Gaps:3 49.54 327 75.93 6e-80 rRNA 2'-O-methyltransferase fibrillarin OS Mus musculus GN Fbl PE 2 SV 2
blastp_uniprot_sprot sp|P22087|FBRL_HUMAN 68 232 + 165 Gaps:3 50.47 321 75.93 7e-80 rRNA 2'-O-methyltransferase fibrillarin OS Homo sapiens GN FBL PE 1 SV 2
blastp_uniprot_sprot sp|P22509|FBRL_RAT 68 232 + 165 Gaps:3 49.54 327 75.93 7e-80 rRNA 2'-O-methyltransferase fibrillarin OS Rattus norvegicus GN Fbl PE 1 SV 2
blastp_uniprot_sprot sp|Q8I1F4|FBRL_DROER 75 232 + 158 Gaps:3 44.93 345 76.13 9e-77 rRNA 2'-O-methyltransferase fibrillarin OS Drosophila erecta GN Fib PE 3 SV 1
blastp_uniprot_sprot sp|P22232|FBRL_XENLA 72 232 + 161 Gaps:5 48.92 323 74.68 9e-77 rRNA 2'-O-methyltransferase fibrillarin OS Xenopus laevis GN fbl PE 2 SV 1
blastp_uniprot_sprot sp|Q9W1V3|FBRL_DROME 75 232 + 158 Gaps:3 45.06 344 75.48 5e-76 rRNA 2'-O-methyltransferase fibrillarin OS Drosophila melanogaster GN Fib PE 2 SV 1
blastp_uniprot_sprot sp|A6NHQ2|FBLL1_HUMAN 78 232 + 155 Gaps:3 45.65 333 75.66 2e-75 rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 OS Homo sapiens GN FBLL1 PE 1 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 174 188 15 PS00566 none Fibrillarin signature. IPR020813
SUPERFAMILY 78 232 155 SSF53335 none none IPR029063
PRINTS 149 170 22 PR00052 none Fibrillarin signature IPR000692
PRINTS 94 113 20 PR00052 none Fibrillarin signature IPR000692
PRINTS 122 141 20 PR00052 none Fibrillarin signature IPR000692
PRINTS 174 191 18 PR00052 none Fibrillarin signature IPR000692
PRINTS 199 228 30 PR00052 none Fibrillarin signature IPR000692
Gene3D 71 126 56 G3DSA:3.30.200.20 none none none
PANTHER 7 232 226 PTHR10335 none none none
Pfam 78 234 157 PF01269 none Fibrillarin IPR000692
Gene3D 127 233 107 G3DSA:3.40.50.150 none none IPR029063

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting