Protein : Qrob_P0441230.2 Q. robur
Protein Identifier  ? Qrob_P0441230.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K03514 - DNA polymerase sigma subunit [EC:2.7.7.7] Code Enzyme  EC:2.7.7.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 359  
Kegg Orthology  K03514
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0016779 nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10008024mg 7 355 + 349 Gaps:25 71.32 516 68.21 1e-166 hypothetical protein
blastp_kegg lcl|cit:102623093 7 355 + 349 Gaps:25 71.32 516 67.39 4e-163 PAP-associated domain-containing protein 5-like
blastp_kegg lcl|pmum:103326213 1 355 + 355 Gaps:42 70.82 538 66.40 2e-161 non-canonical poly(A) RNA polymerase PAPD5
blastp_kegg lcl|csv:101206043 3 355 + 353 Gaps:34 70.77 544 64.42 3e-161 PAP-associated domain-containing protein 5-like
blastp_kegg lcl|pper:PRUPE_ppa003914mg 1 355 + 355 Gaps:42 70.56 540 66.14 1e-160 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1522480 12 355 + 344 Gaps:26 68.82 526 66.85 3e-159 nucleic acid binding protein putative (EC:2.7.7.7)
blastp_kegg lcl|pxb:103947626 9 355 + 347 Gaps:39 67.88 551 64.17 4e-155 non-canonical poly(A) RNA polymerase PAPD7
blastp_kegg lcl|tcc:TCM_031492 6 355 + 350 Gaps:30 69.63 540 65.96 7e-155 Nucleotidyltransferase family protein isoform 1
blastp_kegg lcl|cmo:103493489 3 355 + 353 Gaps:33 70.70 546 63.99 5e-154 non-canonical poly(A) RNA polymerase PAPD5
blastp_kegg lcl|pvu:PHAVU_005G070800g 9 355 + 347 Gaps:46 69.92 522 65.21 8e-154 hypothetical protein
blastp_pdb 3nyb_A 118 349 + 232 Gaps:26 79.88 323 37.21 3e-46 mol:protein length:323 Poly(A) RNA polymerase protein 2
blastp_uniprot_sprot sp|Q8NDF8|PAPD5_HUMAN 99 353 + 255 Gaps:30 48.08 572 40.73 2e-55 Non-canonical poly(A) RNA polymerase PAPD5 OS Homo sapiens GN PAPD5 PE 1 SV 2
blastp_uniprot_sprot sp|Q68ED3|PAPD5_MOUSE 99 353 + 255 Gaps:30 43.44 633 40.73 2e-55 Non-canonical poly(A) RNA polymerase PAPD5 OS Mus musculus GN Papd5 PE 1 SV 2
blastp_uniprot_sprot sp|Q5XG87|PAPD7_HUMAN 92 353 + 262 Gaps:30 36.53 772 40.43 1e-53 Non-canonical poly(A) RNA polymerase PAPD7 OS Homo sapiens GN PAPD7 PE 1 SV 3
blastp_uniprot_sprot sp|Q6PB75|PAPD7_MOUSE 126 353 + 228 Gaps:28 46.13 542 40.80 8e-48 Non-canonical poly(A) RNA polymerase PAPD7 OS Mus musculus GN Papd7 PE 2 SV 2
blastp_uniprot_sprot sp|P53632|PAP2_YEAST 118 349 + 232 Gaps:26 44.18 584 37.60 5e-46 Poly(A) RNA polymerase protein 2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PAP2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9UTN3|CID14_SCHPO 101 356 + 256 Gaps:25 41.08 684 33.81 4e-45 Poly(A) RNA polymerase cid14 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cid14 PE 1 SV 2
blastp_uniprot_sprot sp|Q9HFW3|TRF5_ASHGO 118 349 + 232 Gaps:27 41.37 626 37.07 8e-44 Poly(A) RNA polymerase protein 1 OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN TRF5 PE 3 SV 1
blastp_uniprot_sprot sp|P48561|TRF5_YEAST 97 349 + 253 Gaps:28 43.77 642 35.23 1e-43 Poly(A) RNA polymerase protein 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TRF5 PE 1 SV 2
blastp_uniprot_sprot sp|G5EFL0|GLD4_CAEEL 115 355 + 241 Gaps:32 32.07 845 31.37 3e-32 Poly(A) RNA polymerase gld-4 OS Caenorhabditis elegans GN gld-4 PE 1 SV 1
blastp_uniprot_sprot sp|Q5VYS8|TUT7_HUMAN 122 287 + 166 Gaps:14 11.37 1495 30.00 5e-11 Terminal uridylyltransferase 7 OS Homo sapiens GN ZCCHC6 PE 1 SV 1
rpsblast_cdd gnl|CDD|34857 115 349 + 235 Gaps:34 55.81 482 32.71 7e-42 COG5260 TRF4 DNA polymerase sigma [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|143392 135 245 + 111 Gaps:1 98.25 114 35.71 5e-27 cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha mouse testis-specific cytoplasmic PAP beta human nuclear PAP gamma Saccharomyces cerevisiae PAP1 TRF4 and-5 Schizosaccharomyces pombe caffeine-induced death proteins -1 and -14 Caenorhabditis elegans Germ Line Development-2 and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1 and Trypanosoma brucei 3'-TUTase-1 -2 and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily two carboxylates Dx[D/E] together with a third more distal carboxylate coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family these carboxylate residues are conserved.
rpsblast_cdd gnl|CDD|202779 283 341 + 59 Gaps:2 100.00 59 42.37 1e-11 pfam03828 PAP_assoc Cid1 family poly A polymerase. This domain is found in poly(A) polymerases and has been shown to have polynucleotide adenylyltransferase activity. Proteins in this family have been located to both the nucleus and the cytoplasm.
rpsblast_cdd gnl|CDD|202040 140 226 + 87 Gaps:4 98.91 92 23.08 5e-07 pfam01909 NTP_transf_2 Nucleotidyltransferase domain. Members of this family belong to a large family of nucleotidyltransferases. This family includes kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTase in-activates antibiotics by catalyzing the addition of a nucleotidyl group onto the drug.
rpsblast_kog gnl|CDD|37117 47 353 + 307 Gaps:34 63.62 514 37.31 2e-61 KOG1906 KOG1906 KOG1906 DNA polymerase sigma [Replication recombination and repair].
rpsblast_kog gnl|CDD|37488 156 292 + 137 Gaps:9 24.16 596 26.39 3e-09 KOG2277 KOG2277 KOG2277 S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control cell division chromosome partitioning].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 141 231 91 PF01909 none Nucleotidyltransferase domain IPR002934
PANTHER 95 353 259 PTHR23092:SF15 none none none
SUPERFAMILY 112 244 133 SSF81301 none none none
Gene3D 128 271 144 G3DSA:3.30.460.10 none none none
SUPERFAMILY 251 355 105 SSF81631 none none none
Pfam 283 341 59 PF03828 none Cid1 family poly A polymerase IPR002058
PANTHER 95 353 259 PTHR23092 none none none

0 Localization

15 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting