Protein : Qrob_P0437570.2 Q. robur
Protein Identifier  ? Qrob_P0437570.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR12665 - ORMDL PROTEINS Gene Prediction Quality  validated
Protein length 

Sequence

Length: 113  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0005789 endoplasmic reticulum membrane The lipid bilayer surrounding the endoplasmic reticulum.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103483168 1 112 + 112 none 71.34 157 92.86 7e-73 ORM1-like protein 3
blastp_kegg lcl|csv:101207630 1 112 + 112 none 71.34 157 92.86 8e-73 uncharacterized LOC101207630
blastp_kegg lcl|cit:102606829 1 112 + 112 none 70.89 158 91.96 2e-72 hypothetical protein
blastp_kegg lcl|cic:CICLE_v100226372m 1 112 + 112 none 99.12 113 91.96 2e-72 hypothetical protein
blastp_kegg lcl|tcc:TCM_005108 1 112 + 112 none 70.00 160 92.86 3e-72 ORMDL family protein
blastp_kegg lcl|vvi:100258632 1 112 + 112 none 71.34 157 93.75 4e-72 uncharacterized LOC100258632
blastp_kegg lcl|gmx:100813346 1 112 + 112 none 71.34 157 91.07 5e-72 uncharacterized LOC100813346
blastp_kegg lcl|mdm:103439379 1 112 + 112 none 71.34 157 91.96 6e-72 ORM1-like protein 2
blastp_kegg lcl|cam:101515064 1 112 + 112 none 71.34 157 91.07 1e-71 ORM1-like protein 3-like
blastp_kegg lcl|pxb:103964238 1 112 + 112 none 70.89 158 91.07 1e-71 ORM1-like protein 2
blastp_uniprot_sprot sp|O42901|YBA9_SCHPO 15 112 + 98 none 52.69 186 40.82 5e-20 Uncharacterized protein C119.09c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBC119.09c PE 2 SV 3
blastp_uniprot_sprot sp|Q8N138|ORML3_HUMAN 13 112 + 100 Gaps:1 66.01 153 43.56 7e-19 ORM1-like protein 3 OS Homo sapiens GN ORMDL3 PE 1 SV 1
blastp_uniprot_sprot sp|D2I2F3|ORML3_AILME 13 112 + 100 Gaps:1 66.01 153 43.56 7e-19 ORM1-like protein 3 OS Ailuropoda melanoleuca GN ORMDL3 PE 3 SV 1
blastp_uniprot_sprot sp|Q921I0|ORML1_MOUSE 13 112 + 100 Gaps:1 66.01 153 43.56 8e-19 ORM1-like protein 1 OS Mus musculus GN Ormdl1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R570|ORML3_PONAB 13 112 + 100 Gaps:1 66.01 153 43.56 9e-19 ORM1-like protein 3 OS Pongo abelii GN ORMDL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q0VD15|ORML3_BOVIN 13 112 + 100 Gaps:1 66.01 153 43.56 9e-19 ORM1-like protein 3 OS Bos taurus GN ORMDL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q5XJR6|ORML3_DANRE 13 112 + 100 Gaps:1 66.01 153 42.57 9e-19 ORM1-like protein 3 OS Danio rerio GN ormdl3 PE 2 SV 1
blastp_uniprot_sprot sp|Q53FV1|ORML2_HUMAN 13 112 + 100 Gaps:1 66.01 153 42.57 1e-18 ORM1-like protein 2 OS Homo sapiens GN ORMDL2 PE 2 SV 2
blastp_uniprot_sprot sp|Q6QI25|ORML3_RAT 13 112 + 100 Gaps:1 66.01 153 43.56 1e-18 ORM1-like protein 3 OS Rattus norvegicus GN Ormdl3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9CPZ6|ORML3_MOUSE 13 112 + 100 Gaps:1 66.01 153 43.56 1e-18 ORM1-like protein 3 OS Mus musculus GN Ormdl3 PE 2 SV 1
rpsblast_cdd gnl|CDD|190849 15 112 + 98 none 72.59 135 53.06 2e-38 pfam04061 ORMDL ORMDL family. Evidence form suggests that ORMDLs are involved in protein folding in the ER. Orm proteins have been identified as negative regulators of sphingolipid synthesis that form a conserved complex with serine palmitoyltransferase the first and rate-limiting enzyme in sphingolipid production. This novel and conserved protein complex has been termed the SPOTS complex (serine palmitoyltransferase Orm1/2 Tsc3 and Sac1).
rpsblast_cdd gnl|CDD|34685 12 112 + 101 Gaps:1 55.56 180 36.00 4e-18 COG5081 COG5081 Predicted membrane protein [Function unknown].
rpsblast_kog gnl|CDD|38529 4 112 + 109 none 71.24 153 54.13 5e-38 KOG3319 KOG3319 KOG3319 Predicted membrane protein [Function unknown].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 51 68 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 21 45 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 3 112 110 PTHR12665 none none IPR007203
PIRSF 2 112 111 PIRSF018147 none none IPR007203
Pfam 15 112 98 PF04061 none ORMDL family IPR007203
Phobius 69 112 44 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 20 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 46 50 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

2 Localization

Analysis Start End Length
TMHMM 49 68 19
TMHMM 20 42 22

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting