Protein : Qrob_P0435170.2 Q. robur
Protein Identifier  ? Qrob_P0435170.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K02940 - large subunit ribosomal protein L9e Gene Prediction Quality  validated
Protein length 

Sequence

Length: 195  
Kegg Orthology  K02940
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0019843 rRNA binding Interacting selectively and non-covalently with ribosomal RNA.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103482923 1 194 + 194 Gaps:2 100.00 194 86.08 1e-113 60S ribosomal protein L9
blastp_kegg lcl|csv:101223783 1 194 + 194 Gaps:2 100.00 194 85.57 1e-112 60S ribosomal protein L9-like
blastp_kegg lcl|csv:101216899 1 194 + 194 Gaps:2 100.00 194 85.57 1e-112 60S ribosomal protein L9-like
blastp_kegg lcl|pmum:103333548 1 194 + 194 Gaps:2 100.00 194 84.02 1e-110 60S ribosomal protein L9-1
blastp_kegg lcl|pper:PRUPE_ppa011825mg 1 194 + 194 Gaps:2 100.00 194 84.02 1e-110 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1315040 1 194 + 194 Gaps:2 100.00 194 82.47 2e-109 60S ribosomal protein L9 putative
blastp_kegg lcl|rcu:RCOM_0342660 1 193 + 193 Gaps:2 99.48 194 83.42 6e-109 60S ribosomal protein L9 putative
blastp_kegg lcl|cit:102631347 1 193 + 193 Gaps:2 99.48 194 83.42 9e-108 60S ribosomal protein L9-1-like
blastp_kegg lcl|cit:102629475 1 193 + 193 Gaps:2 99.48 194 83.42 9e-108 60S ribosomal protein L9-1-like
blastp_kegg lcl|pxb:103943339 1 194 + 194 Gaps:2 100.00 194 81.44 1e-107 60S ribosomal protein L9-like
blastp_pdb 3izr_F 1 193 + 193 Gaps:6 99.47 190 76.72 2e-100 mol:protein length:190 60S ribosomal protein L9 (L6p)
blastp_pdb 2zkr_e 1 194 + 194 Gaps:5 99.48 192 53.40 8e-64 mol:protein length:192 60S Ribosomal protein L9
blastp_pdb 3u5i_H 1 193 + 193 Gaps:7 99.48 191 47.37 3e-52 mol:protein length:191 60S ribosomal protein L9-A
blastp_pdb 3u5e_H 1 193 + 193 Gaps:7 99.48 191 47.37 3e-52 mol:protein length:191 60S ribosomal protein L9-A
blastp_pdb 3o5h_I 1 193 + 193 Gaps:7 99.48 191 47.37 3e-52 mol:protein length:191 60S ribosomal protein L9-A
blastp_pdb 3o58_I 1 193 + 193 Gaps:7 99.48 191 47.37 3e-52 mol:protein length:191 60S ribosomal protein L9-A
blastp_pdb 3j16_F 1 193 + 193 Gaps:7 99.48 191 47.37 3e-52 mol:protein length:191 60S ribosomal protein L6
blastp_pdb 3izs_F 1 193 + 193 Gaps:7 99.48 191 47.37 3e-52 mol:protein length:191 60S ribosomal protein rpL9 (L6p)
blastp_pdb 1s1i_H 1 193 + 193 Gaps:7 99.48 191 47.37 3e-52 mol:protein length:191 60S ribosomal protein L9-A
blastp_pdb 3jyw_H 8 187 + 180 Gaps:7 98.88 179 47.46 7e-49 mol:protein length:179 60S ribosomal protein L9(A)
blastp_uniprot_sprot sp|P30707|RL9_PEA 1 194 + 194 Gaps:3 100.00 193 81.35 3e-105 60S ribosomal protein L9 OS Pisum sativum GN RPL9 PE 1 SV 1
blastp_uniprot_sprot sp|P49209|RL91_ARATH 1 194 + 194 Gaps:2 100.00 194 76.80 2e-100 60S ribosomal protein L9-1 OS Arabidopsis thaliana GN RPL9B PE 2 SV 3
blastp_uniprot_sprot sp|P49210|RL9_ORYSJ 1 193 + 193 Gaps:6 99.47 190 76.72 8e-100 60S ribosomal protein L9 OS Oryza sativa subsp. japonica GN RPL9 PE 2 SV 3
blastp_uniprot_sprot sp|Q9SZX9|RL92_ARATH 1 194 + 194 Gaps:2 100.00 194 76.29 1e-99 60S ribosomal protein L9-2 OS Arabidopsis thaliana GN RPL9D PE 2 SV 1
blastp_uniprot_sprot sp|Q90YW0|RL9_ICTPU 1 194 + 194 Gaps:5 99.48 192 56.54 5e-67 60S ribosomal protein L9 OS Ictalurus punctatus GN rpl9 PE 2 SV 1
blastp_uniprot_sprot sp|P51410|RL9_MOUSE 1 194 + 194 Gaps:5 99.48 192 53.40 1e-63 60S ribosomal protein L9 OS Mus musculus GN Rpl9 PE 2 SV 2
blastp_uniprot_sprot sp|Q5IFJ7|RL9_MACFA 1 194 + 194 Gaps:5 99.48 192 53.93 2e-63 60S ribosomal protein L9 OS Macaca fascicularis GN RPL9 PE 2 SV 1
blastp_uniprot_sprot sp|Q963B7|RL9_SPOFR 1 190 + 190 Gaps:7 97.37 190 54.05 3e-63 60S ribosomal protein L9 OS Spodoptera frugiperda GN RpL9 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R9Q7|RL9_PONAB 1 194 + 194 Gaps:5 99.48 192 53.40 3e-63 60S ribosomal protein L9 OS Pongo abelii GN RPL9 PE 2 SV 1
blastp_uniprot_sprot sp|P32969|RL9_HUMAN 1 194 + 194 Gaps:5 99.48 192 53.40 3e-63 60S ribosomal protein L9 OS Homo sapiens GN RPL9 PE 1 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 103 180 78 PF00347 none Ribosomal protein L6 IPR020040
Pfam 12 90 79 PF00347 none Ribosomal protein L6 IPR020040
Gene3D 91 192 102 G3DSA:3.90.930.12 none none IPR020040
SUPERFAMILY 2 90 89 SSF56053 none none IPR020040
PANTHER 1 194 194 PTHR11655:SF16 none none none
PANTHER 1 194 194 PTHR11655 none none IPR000702
PIRSF 1 190 190 PIRSF002162 none none IPR000702
Gene3D 8 90 83 G3DSA:3.90.930.12 none none IPR020040
SUPERFAMILY 91 187 97 SSF56053 none none IPR020040

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting