Protein : Qrob_P0433390.2 Q. robur
Protein Identifier  ? Qrob_P0433390.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K02878 - large subunit ribosomal protein L16 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 120  
Kegg Orthology  K02878
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0019843 rRNA binding Interacting selectively and non-covalently with ribosomal RNA.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:4025020 1 119 + 119 none 88.15 135 97.48 4e-78 rpl16 ViviCp060 ribosomal protein L16
blastp_kegg lcl|vvi:7498629 1 119 + 119 none 88.15 135 97.48 4e-78 rpl16 ViviM_p114 ribosomal protein L16
blastp_kegg lcl|tcc:ThcaC_p058 1 119 + 119 none 88.15 135 95.80 6e-77 rpl16 ribosomal protein L16
blastp_kegg lcl|cit:4271189 1 119 + 119 none 87.50 136 94.96 2e-76 rpl16 CisiCp059 ribosomal protein L16
blastp_kegg lcl|pmum:18668069 1 119 + 119 none 88.15 135 94.12 5e-76 rpl16 CP95_p029 ribosomal protein L16
blastp_kegg lcl|pper:PrpeC_p059 1 119 + 119 none 88.15 135 94.12 5e-76 rpl16 ribosomal protein L16
blastp_kegg lcl|fve:10251558 1 118 + 118 none 86.76 136 94.92 9e-76 rpl16 FvH4_C0080 ribosomal protein L16
blastp_kegg lcl|gmx:3989334 1 119 + 119 none 88.15 135 92.44 6e-75 rpl16 GlmaCp058 ribosomal protein L16
blastp_kegg lcl|rcu:RCOM_ORF00081 1 119 + 119 none 100.00 119 91.60 2e-74 rpl16 ribosomal protein L16
blastp_kegg lcl|csv:3429291 1 119 + 119 none 88.15 135 92.44 2e-74 rpl16 CsCp079 ribosomal protein L16
blastp_pdb 3bbo_O 1 119 + 119 none 88.15 135 93.28 5e-71 mol:protein length:135 Ribosomal Protein L16
blastp_pdb 3pip_J 1 116 + 116 none 82.27 141 56.90 2e-44 mol:protein length:141 50S ribosomal protein L16
blastp_pdb 3pio_J 1 116 + 116 none 82.27 141 56.90 2e-44 mol:protein length:141 50S ribosomal protein L16
blastp_pdb 1y69_K 1 116 + 116 none 82.27 141 56.90 2e-44 mol:protein length:141 50S ribosomal protein L16
blastp_pdb 1xbp_K 1 116 + 116 none 82.27 141 56.90 2e-44 mol:protein length:141 ribosomal protein L16
blastp_pdb 1nwy_K 1 116 + 116 none 82.27 141 56.90 2e-44 mol:protein length:141 ribosomal protein L16
blastp_pdb 1nwx_K 1 116 + 116 none 82.27 141 56.90 2e-44 mol:protein length:141 ribosomal protein L16
blastp_pdb 1njp_K 1 116 + 116 none 82.27 141 56.90 2e-44 mol:protein length:141 50S ribosomal protein L16
blastp_pdb 1njm_K 1 116 + 116 none 82.27 141 56.90 2e-44 mol:protein length:141 50S ribosomal protein L16
blastp_pdb 3dll_J 1 116 + 116 none 81.69 142 56.90 3e-44 mol:protein length:142 50S ribosomal protein L16
blastp_uniprot_sprot sp|Q0ZIY1|RK16_VITVI 1 119 + 119 none 88.15 135 97.48 1e-79 50S ribosomal protein L16 chloroplastic OS Vitis vinifera GN rpl16 PE 3 SV 1
blastp_uniprot_sprot sp|Q49KW1|RK16_EUCGG 1 119 + 119 none 88.15 135 96.64 4e-79 50S ribosomal protein L16 chloroplastic OS Eucalyptus globulus subsp. globulus GN rpl16 PE 3 SV 1
blastp_uniprot_sprot sp|Q2L940|RK16_GOSHI 1 119 + 119 none 88.15 135 95.80 2e-78 50S ribosomal protein L16 chloroplastic OS Gossypium hirsutum GN rpl16 PE 3 SV 1
blastp_uniprot_sprot sp|Q09ME0|RK16_CITSI 1 119 + 119 none 87.50 136 94.96 8e-78 50S ribosomal protein L16 chloroplastic OS Citrus sinensis GN rpl16 PE 3 SV 1
blastp_uniprot_sprot sp|A0ZZ72|RK16_GOSBA 1 119 + 119 none 88.15 135 94.96 1e-77 50S ribosomal protein L16 chloroplastic OS Gossypium barbadense GN rpl16 PE 3 SV 1
blastp_uniprot_sprot sp|B1NWI7|RK16_MANES 1 119 + 119 none 88.15 135 94.12 2e-77 50S ribosomal protein L16 chloroplastic OS Manihot esculenta GN rpl16 PE 3 SV 1
blastp_uniprot_sprot sp|A4QJN6|RK16_AETGR 1 118 + 118 none 87.41 135 94.07 1e-76 50S ribosomal protein L16 chloroplastic OS Aethionema grandiflorum GN rpl16 PE 3 SV 1
blastp_uniprot_sprot sp|A4QJF2|RK16_AETCO 1 118 + 118 none 87.41 135 94.07 1e-76 50S ribosomal protein L16 chloroplastic OS Aethionema cordifolium GN rpl16 PE 3 SV 1
blastp_uniprot_sprot sp|B0Z5G5|RK16_OENPA 1 119 + 119 none 88.15 135 93.28 1e-76 50S ribosomal protein L16 chloroplastic OS Oenothera parviflora GN rpl16 PE 3 SV 1
blastp_uniprot_sprot sp|B0Z581|RK16_OENGL 1 119 + 119 none 88.15 135 93.28 1e-76 50S ribosomal protein L16 chloroplastic OS Oenothera glazioviana GN rpl16 PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 43 54 12 PS00586 none Ribosomal protein L16 signature 1. IPR020798
Gene3D 7 118 112 G3DSA:3.90.1170.10 none none IPR016180
PRINTS 8 20 13 PR00060 none Ribosomal protein L16 signature IPR000114
PRINTS 42 71 30 PR00060 none Ribosomal protein L16 signature IPR000114
PRINTS 72 101 30 PR00060 none Ribosomal protein L16 signature IPR000114
PRINTS 26 37 12 PR00060 none Ribosomal protein L16 signature IPR000114
Pfam 3 116 114 PF00252 none Ribosomal protein L16p/L10e IPR016180
PANTHER 1 117 117 PTHR12220:SF13 none none none
TIGRFAM 1 111 111 TIGR01164 none rplP_bact: ribosomal protein uL16 IPR000114
ProSitePatterns 66 77 12 PS00701 none Ribosomal protein L16 signature 2. IPR020798
PANTHER 1 117 117 PTHR12220 none none IPR000114
SUPERFAMILY 1 118 118 SSF54686 none none IPR016180

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting