Protein : Qrob_P0433330.2 Q. robur
Protein Identifier  ? Qrob_P0433330.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) K02950 - small subunit ribosomal protein S12 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 177  
Kegg Orthology  K02950
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|atr:s02071p00004290 2 129 + 128 Gaps:5 95.00 140 90.23 1e-76 AMTR_s02071p00004290 hypothetical protein
blastp_kegg lcl|csv:101207557 17 129 + 113 Gaps:14 100.00 127 85.83 4e-69 30S ribosomal protein S12-B chloroplastic-like
blastp_kegg lcl|mtr:MTR_3g035660 17 124 + 108 Gaps:1 12.28 871 93.46 8e-59 NAD(P)H-quinone oxidoreductase subunit 2 A
blastp_kegg lcl|cam:101508960 18 127 + 110 Gaps:1 12.62 864 89.91 2e-58 NAD(P)H-quinone oxidoreductase subunit 2 B chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_002G050200g 41 129 + 89 none 96.74 92 100.00 2e-56 hypothetical protein
blastp_kegg lcl|gmx:100776305 41 139 + 99 none 58.58 169 89.90 7e-53 30S ribosomal protein S12-B chloroplastic-like
blastp_kegg lcl|bdi:100820917 36 129 + 94 none 100.00 94 88.30 2e-52 30S ribosomal protein S12-B chloroplastic-like
blastp_kegg lcl|bdi:100839429 39 129 + 91 none 95.79 95 91.21 3e-52 30S ribosomal protein S12-B chloroplastic-like
blastp_kegg lcl|bdi:100840772 39 129 + 91 none 97.85 93 91.21 4e-52 30S ribosomal protein S12-B chloroplastic-like
blastp_kegg lcl|vvi:100854829 41 129 + 89 none 77.39 115 93.26 1e-51 30S ribosomal protein S12-B chloroplastic-like
blastp_pdb 3bbn_L 50 126 + 77 none 62.60 123 100.00 5e-49 mol:protein length:123 Ribosomal Protein S12
blastp_pdb 3fic_L 50 126 + 77 none 61.60 125 84.42 4e-42 mol:protein length:125 30S ribosomal protein S12
blastp_pdb 3pyu_L 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3pys_L 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3pyq_L 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3pyn_L 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3ms0_L 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3mr8_L 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 30S ribosomal protein S12
blastp_pdb 3izz_F 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 Protein S12 (Small Subunit)
blastp_pdb 2r1g_H 50 126 + 77 none 62.10 124 84.42 4e-42 mol:protein length:124 30S ribosomal protein S12
blastp_uniprot_sprot sp|A4GYN8|RR12B_POPTR 41 126 + 86 none 63.70 135 98.84 3e-54 30S ribosomal protein S12-B chloroplastic OS Populus trichocarpa GN rps12-B PE 3 SV 1
blastp_uniprot_sprot sp|A4QJX7|RR12B_OLIPU 31 126 + 96 Gaps:2 79.03 124 84.69 5e-50 30S ribosomal protein S12-B chloroplastic OS Olimarabidopsis pumila GN rps12-B PE 3 SV 1
blastp_uniprot_sprot sp|Q0G9J5|RR12_LIRTU 50 129 + 80 none 67.80 118 98.75 2e-49 30S ribosomal protein S12 chloroplastic OS Liriodendron tulipifera GN rps12-A PE 3 SV 1
blastp_uniprot_sprot sp|Q332V3|RR12_LACSA 50 129 + 80 none 67.80 118 98.75 2e-49 30S ribosomal protein S12 chloroplastic OS Lactuca sativa GN rps12-A PE 3 SV 1
blastp_uniprot_sprot sp|Q1KXY0|RR12_HELAN 50 129 + 80 none 67.80 118 98.75 2e-49 30S ribosomal protein S12 chloroplastic OS Helianthus annuus GN rps12-A PE 3 SV 1
blastp_uniprot_sprot sp|A4GGC9|RR12_PHAVU 50 126 + 77 none 62.60 123 100.00 1e-48 30S ribosomal protein S12 chloroplastic OS Phaseolus vulgaris GN rps12-A PE 3 SV 1
blastp_uniprot_sprot sp|Q9B133|RR12_LOTJA 50 126 + 77 none 62.60 123 100.00 1e-48 30S ribosomal protein S12 chloroplastic OS Lotus japonicus GN rps12-A PE 3 SV 1
blastp_uniprot_sprot sp|P46296|RR12_CUSEU 50 126 + 77 none 62.60 123 100.00 1e-48 Plastid 30S ribosomal protein S12 OS Cuscuta europaea GN rps12 PE 3 SV 1
blastp_uniprot_sprot sp|P07134|RR12_SOYBN 50 126 + 77 none 62.60 123 100.00 2e-48 30S ribosomal protein S12 chloroplastic OS Glycine max GN rps12-A PE 3 SV 2
blastp_uniprot_sprot sp|Q09FT7|RR12_NANDO 50 126 + 77 none 62.60 123 100.00 2e-48 30S ribosomal protein S12 chloroplastic OS Nandina domestica GN rps12-A PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 50 126 77 PTHR11652 none none IPR006032
SUPERFAMILY 46 126 81 SSF50249 none none IPR012340
Pfam 34 126 93 PF00164 none Ribosomal protein S12/S23 IPR006032
Gene3D 30 126 97 G3DSA:2.40.50.140 none none IPR012340
TIGRFAM 26 127 102 TIGR00981 none rpsL_bact: ribosomal protein uS12 IPR005679
PRINTS 69 88 20 PR01034 none Ribosomal protein S12 signature IPR005679
PRINTS 105 121 17 PR01034 none Ribosomal protein S12 signature IPR005679
PRINTS 53 68 16 PR01034 none Ribosomal protein S12 signature IPR005679
PRINTS 88 105 18 PR01034 none Ribosomal protein S12 signature IPR005679
ProSitePatterns 54 61 8 PS00055 none Ribosomal protein S12 signature. IPR006032

0 Localization

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting