Protein : Qrob_P0431360.2 Q. robur
Protein Identifier  ? Qrob_P0431360.2 Organism . Name  Quercus robur
Score  6.0 Score Type  egn
Protein Description  (M=3) KOG3796 - Ammonium transporter RHBG [Intracellular trafficking secretion and vesicular transport General function prediction only]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 273  
Kegg Orthology  K03320
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0008519 ammonium transmembrane transporter activity Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO:0015696 ammonium transport The directed movement of ammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO:0072488 ammonium transmembrane transport The directed movement of ammonium across a membrane by means of some agent such as a transporter or pore. Ammonium is the cation NH4+.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100259492 5 272 + 268 none 55.26 485 82.84 2e-153 ammonium transporter 3 member 1-like
blastp_kegg lcl|vvi:100256159 5 272 + 268 none 55.26 485 83.96 3e-153 ammonium transporter 3 member 1-like
blastp_kegg lcl|bdi:100829578 5 272 + 268 Gaps:2 55.90 483 79.26 1e-152 ammonium transporter 3 member 1-like
blastp_kegg lcl|vvi:100252515 5 272 + 268 none 55.49 483 83.21 1e-152 ammonium transporter 3 member 1-like
blastp_kegg lcl|bdi:100830191 5 272 + 268 Gaps:2 54.99 491 78.52 4e-152 ammonium transporter 3 member 1-like
blastp_kegg lcl|pper:PRUPE_ppa008980mg 6 272 + 267 Gaps:2 86.22 312 81.41 7e-150 hypothetical protein
blastp_kegg lcl|mus:103986370 5 269 + 265 none 54.87 483 81.51 2e-149 ammonium transporter 3 member 1-like
blastp_kegg lcl|mdm:103456299 5 272 + 268 Gaps:4 54.81 489 83.21 3e-149 ammonium transporter 3 member 1-like
blastp_kegg lcl|rcu:RCOM_0862770 5 272 + 268 none 54.81 489 84.33 3e-148 ammonium transporter putative
blastp_kegg lcl|osa:4324937 5 256 + 252 Gaps:1 50.80 498 80.24 4e-146 Os01g0870300
blastp_pdb 2b2j_A 3 240 + 238 Gaps:16 56.14 399 36.61 6e-28 mol:protein length:399 ammonium transporter
blastp_pdb 2b2i_A 3 240 + 238 Gaps:16 56.14 399 36.61 6e-28 mol:protein length:399 ammonium transporter
blastp_pdb 2b2h_A 3 240 + 238 Gaps:16 56.14 399 36.61 6e-28 mol:protein length:399 ammonium transporter
blastp_pdb 2b2f_A 3 240 + 238 Gaps:16 56.14 399 36.61 6e-28 mol:protein length:399 ammonium transporter
blastp_pdb 2ns1_A 5 238 + 234 Gaps:23 54.13 412 36.32 1e-26 mol:protein length:412 Ammonia channel
blastp_pdb 1xqf_A 5 238 + 234 Gaps:23 53.35 418 36.32 1e-26 mol:protein length:418 Probable ammonium transporter
blastp_pdb 1xqe_A 5 238 + 234 Gaps:23 53.35 418 36.32 1e-26 mol:protein length:418 Probable ammonium transporter
blastp_pdb 2nuu_F 5 238 + 234 Gaps:23 53.73 415 36.32 1e-26 mol:protein length:415 Ammonia channel
blastp_pdb 2nuu_E 5 238 + 234 Gaps:23 53.73 415 36.32 1e-26 mol:protein length:415 Ammonia channel
blastp_pdb 2nuu_D 5 238 + 234 Gaps:23 53.73 415 36.32 1e-26 mol:protein length:415 Ammonia channel
blastp_uniprot_sprot sp|Q84KJ6|AMT31_ORYSJ 5 256 + 252 Gaps:1 50.80 498 80.24 1e-147 Ammonium transporter 3 member 1 OS Oryza sativa subsp. japonica GN AMT3-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q69T29|AMT33_ORYSJ 5 272 + 268 Gaps:4 55.00 480 72.35 4e-131 Ammonium transporter 3 member 3 OS Oryza sativa subsp. japonica GN AMT3-3 PE 2 SV 1
blastp_uniprot_sprot sp|Q851M9|AMT32_ORYSJ 5 262 + 258 Gaps:2 53.44 479 76.56 1e-130 Ammonium transporter 3 member 2 OS Oryza sativa subsp. japonica GN AMT3-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q84KJ7|AMT21_ORYSJ 5 252 + 248 Gaps:1 50.82 486 77.33 6e-123 Ammonium transporter 2 member 1 OS Oryza sativa subsp. japonica GN AMT2-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M6N7|AMT2_ARATH 5 271 + 267 Gaps:3 56.84 475 68.89 1e-122 Ammonium transporter 2 OS Arabidopsis thaliana GN AMT2 PE 1 SV 2
blastp_uniprot_sprot sp|Q8S230|AMT22_ORYSJ 5 251 + 247 Gaps:1 49.10 501 71.54 7e-122 Ammonium transporter 2 member 2 OS Oryza sativa subsp. japonica GN AMT2-2 PE 2 SV 2
blastp_uniprot_sprot sp|Q8S233|AMT23_ORYSJ 5 252 + 248 Gaps:1 49.70 497 72.06 1e-114 Ammonium transporter 2 member 3 OS Oryza sativa subsp. japonica GN AMT2-3 PE 2 SV 1
blastp_uniprot_sprot sp|Q10CV4|AMT41_ORYSJ 5 262 + 258 Gaps:47 80.60 299 55.60 8e-68 Putative ammonium transporter 4 member 1 OS Oryza sativa subsp. japonica GN AMT4-1 PE 3 SV 1
blastp_uniprot_sprot sp|O66515|AMT_AQUAE 10 240 + 231 Gaps:13 51.54 423 39.45 1e-33 Ammonia channel OS Aquifex aeolicus (strain VF5) GN amt PE 1 SV 1
blastp_uniprot_sprot sp|Q9US00|AMT2_SCHPO 5 251 + 247 Gaps:15 48.44 512 33.87 2e-29 Ammonium transporter 2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN amt2 PE 3 SV 1

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 21 38 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 100 104 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 105 126 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 217 272 56 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 70 80 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 127 137 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 81 99 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 50 69 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 39 49 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 161 190 30 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 3 220 218 G3DSA:1.10.3430.10 none none IPR029020
Pfam 3 238 236 PF00909 none Ammonium Transporter Family IPR024041
SUPERFAMILY 3 220 218 SSF111352 none none IPR024041
PANTHER 5 254 250 PTHR11730 none none IPR001905
PANTHER 5 254 250 PTHR11730:SF17 none none none
Phobius 138 160 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 20 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 191 216 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

6 Localization

Analysis Start End Length
TMHMM 190 212 22
TMHMM 138 160 22
TMHMM 53 75 22
TMHMM 21 38 17
TMHMM 80 102 22
TMHMM 106 125 19

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting