Protein : Qrob_P0430950.2 Q. robur
Protein Identifier  ? Qrob_P0430950.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR31636:SF9 - PROTEIN SHORT-ROOT (PTHR31636:SF9) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 435  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0008356 asymmetric cell division The asymmetric division of cells to produce two daughter cells with different developmental potentials. It is of fundamental significance for the generation of cell diversity.
GO:0009956 radial pattern formation The regionalization process that results in defined areas around a point in which specific types of cell differentiation will occur.
GO:0048366 leaf development The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0017s05450g 1 434 + 434 Gaps:11 100.00 441 83.45 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_019978 25 434 + 410 Gaps:5 89.93 457 83.21 0.0 GRAS family transcription factor
blastp_kegg lcl|pmum:103322293 1 434 + 434 Gaps:12 99.55 448 81.61 0.0 protein SHORT-ROOT-like
blastp_kegg lcl|pper:PRUPEppa1027119mg 1 434 + 434 Gaps:13 99.55 449 81.21 0.0 hypothetical protein
blastp_kegg lcl|mdm:103432758 1 434 + 434 Gaps:21 99.34 458 78.90 0.0 protein SHORT-ROOT-like
blastp_kegg lcl|pxb:103933220 1 434 + 434 Gaps:21 99.34 458 78.68 0.0 protein SHORT-ROOT-like
blastp_kegg lcl|pop:POPTR_0007s01650g 33 434 + 402 Gaps:2 97.32 411 86.25 0.0 POPTRDRAFT_562206 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10020072mg 1 434 + 434 Gaps:26 100.00 460 80.65 0.0 hypothetical protein
blastp_kegg lcl|cit:102610900 1 434 + 434 Gaps:26 100.00 460 80.65 0.0 protein SHORT-ROOT-like
blastp_kegg lcl|vvi:100264604 1 434 + 434 Gaps:4 100.00 436 82.80 0.0 protein SHORT-ROOT-like
blastp_uniprot_sprot sp|Q9SZF7|SHR_ARATH 29 434 + 406 Gaps:31 77.78 531 55.21 6e-148 Protein SHORT-ROOT OS Arabidopsis thaliana GN SHR PE 1 SV 1
blastp_uniprot_sprot sp|A2YN56|SHR1_ORYSI 56 434 + 379 Gaps:46 68.60 602 52.06 2e-135 Protein SHORT-ROOT 1 OS Oryza sativa subsp. indica GN SHR1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8H2X8|SHR1_ORYSJ 56 434 + 379 Gaps:46 68.60 602 51.82 3e-134 Protein SHORT-ROOT 1 OS Oryza sativa subsp. japonica GN SHR1 PE 1 SV 2
blastp_uniprot_sprot sp|Q75I13|SHR2_ORYSJ 56 434 + 379 Gaps:49 69.32 603 50.96 3e-131 Protein SHORT-ROOT 2 OS Oryza sativa subsp. japonica GN SHR2 PE 1 SV 1
blastp_uniprot_sprot sp|A2XIA8|SHR2_ORYSI 56 434 + 379 Gaps:49 69.32 603 50.96 4e-131 Protein SHORT-ROOT 2 OS Oryza sativa subsp. indica GN SHR2 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SN22|SCL32_ARATH 55 434 + 380 Gaps:36 94.15 410 34.46 6e-59 Scarecrow-like protein 32 OS Arabidopsis thaliana GN SCL32 PE 2 SV 1
blastp_uniprot_sprot sp|Q9S7H5|SCL21_ARATH 61 433 + 373 Gaps:28 87.41 413 33.80 4e-51 Scarecrow-like protein 21 OS Arabidopsis thaliana GN SCL21 PE 1 SV 1
blastp_uniprot_sprot sp|Q8GVE1|CIGR2_ORYSJ 61 432 + 372 Gaps:31 67.46 544 34.06 2e-50 Chitin-inducible gibberellin-responsive protein 2 OS Oryza sativa subsp. japonica GN CIGR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LDL7|PAT1_ARATH 62 433 + 372 Gaps:26 75.10 490 31.52 6e-48 Scarecrow-like transcription factor PAT1 OS Arabidopsis thaliana GN PAT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SDQ3|SCL1_ARATH 32 433 + 402 Gaps:39 66.95 593 32.24 1e-46 Scarecrow-like protein 1 OS Arabidopsis thaliana GN SCL1 PE 2 SV 1
rpsblast_cdd gnl|CDD|202673 60 433 + 374 Gaps:22 99.46 372 40.27 1e-91 pfam03514 GRAS GRAS family transcription factor. Sequence analysis of the products of the GRAS (GAI RGA SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect loss of a ground tissue layer in the root. The PAT1 protein is involved in phytochrome A signal transduction.

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 14 434 421 PTHR31636:SF9 none none IPR030019
ProSiteProfiles 32 409 378 PS50985 none GRAS family profile. IPR005202
Pfam 60 433 374 PF03514 none GRAS domain family IPR005202
PANTHER 14 434 421 PTHR31636 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting