Protein : Qrob_P0429840.2 Q. robur
Protein Identifier  ? Qrob_P0429840.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=34) K05391 - cyclic nucleotide gated channel, other eukaryote Gene Prediction Quality  validated
Protein length 

Sequence

Length: 325  
Kegg Orthology  K05391
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0005216 ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
GO:0006811 ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|aly:ARALYDRAFT_918383 25 311 + 287 Gaps:9 40.50 716 51.72 2e-90 hypothetical protein
blastp_kegg lcl|eus:EUTSA_v10012801mg 25 311 + 287 Gaps:13 40.89 719 51.70 4e-90 hypothetical protein
blastp_kegg lcl|ath:AT5G53130 25 311 + 287 Gaps:9 40.50 716 51.38 1e-89 CNGC1 cyclic nucleotide-gated ion channel 1
blastp_kegg lcl|mtr:MTR_3g091080 27 311 + 285 Gaps:8 37.53 770 53.29 2e-89 Cyclic nucleotide-gated ion channel
blastp_kegg lcl|rcu:RCOM_1579800 19 320 + 302 Gaps:9 36.40 838 49.18 8e-89 Cyclic nucleotide-gated ion channel putative
blastp_kegg lcl|brp:103852055 25 311 + 287 Gaps:9 40.79 711 51.38 2e-88 cyclic nucleotide-gated ion channel 1
blastp_kegg lcl|tcc:TCM_015364 25 320 + 296 Gaps:15 41.94 713 51.51 5e-88 Cyclic nucleotide gated channel 1 isoform 1
blastp_kegg lcl|crb:CARUB_v10025973mg 25 311 + 287 Gaps:9 40.50 716 51.03 7e-88 hypothetical protein
blastp_kegg lcl|pop:POPTR_0012s01690g 31 311 + 281 Gaps:15 40.06 709 53.87 3e-87 POPTRDRAFT_569505 cyclic nucleotide-gated channel C family protein
blastp_kegg lcl|csv:101227274 25 311 + 287 Gaps:16 40.20 714 54.36 4e-87 cyclic nucleotide-gated ion channel 1-like
blastp_uniprot_sprot sp|O65717|CNGC1_ARATH 25 311 + 287 Gaps:9 40.50 716 51.38 4e-91 Cyclic nucleotide-gated ion channel 1 OS Arabidopsis thaliana GN CNGC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SKD7|CNGC3_ARATH 37 311 + 275 Gaps:10 39.52 706 40.86 2e-65 Probable cyclic nucleotide-gated ion channel 3 OS Arabidopsis thaliana GN CNGC3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LNJ0|CNG10_ARATH 37 311 + 275 Gaps:10 39.24 711 41.22 4e-65 Probable cyclic nucleotide-gated ion channel 10 OS Arabidopsis thaliana GN CNGC10 PE 2 SV 2
blastp_uniprot_sprot sp|O82226|CNGC6_ARATH 31 311 + 281 Gaps:18 39.22 747 38.57 6e-60 Probable cyclic nucleotide-gated ion channel 6 OS Arabidopsis thaliana GN CNGC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LD40|CNG13_ARATH 37 320 + 284 Gaps:12 41.67 696 39.66 8e-60 Putative cyclic nucleotide-gated ion channel 13 OS Arabidopsis thaliana GN CNGC13 PE 3 SV 2
blastp_uniprot_sprot sp|Q9M0A4|CNGC9_ARATH 31 311 + 281 Gaps:13 39.84 733 37.33 3e-57 Putative cyclic nucleotide-gated ion channel 9 OS Arabidopsis thaliana GN CNGC9 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SKD6|CNG11_ARATH 38 320 + 283 Gaps:14 46.54 621 37.02 2e-55 Cyclic nucleotide-gated ion channel 11 OS Arabidopsis thaliana GN CNGC11 PE 2 SV 2
blastp_uniprot_sprot sp|Q8RWS9|CNGC5_ARATH 31 311 + 281 Gaps:25 40.73 717 38.01 4e-55 Probable cyclic nucleotide-gated ion channel 5 OS Arabidopsis thaliana GN CNGC5 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GWD2|CNG12_ARATH 38 320 + 283 Gaps:14 44.53 649 35.99 6e-53 Probable cyclic nucleotide-gated ion channel 12 OS Arabidopsis thaliana GN CNGC12 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FXH6|CNGC8_ARATH 31 311 + 281 Gaps:16 38.91 753 34.81 3e-51 Putative cyclic nucleotide-gated ion channel 8 OS Arabidopsis thaliana GN CNGC8 PE 3 SV 2
rpsblast_kog gnl|CDD|35719 31 311 + 281 Gaps:46 32.87 727 33.05 2e-40 KOG0498 KOG0498 KOG0498 K+-channel ERG and related proteins contain PAS/PAC sensor domain [Inorganic ion transport and metabolism Signal transduction mechanisms].

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 162 184 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 43 62 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 204 224 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 63 82 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 185 203 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 37 233 197 PTHR10217 none none none
Pfam 85 312 228 PF00520 none Ion transport protein IPR005821
Phobius 127 150 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 281 311 31 PTHR10217:SF465 none none none
PANTHER 281 311 31 PTHR10217 none none none
Phobius 103 126 24 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 151 161 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 42 42 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 37 233 197 PTHR10217:SF465 none none none
Phobius 225 324 100 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 36 230 195 SSF81324 none none none
SUPERFAMILY 293 310 18 SSF81324 none none none
Phobius 83 102 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 69 228 160 G3DSA:1.10.287.70 none none none
Gene3D 293 308 16 G3DSA:1.10.287.70 none none none

5 Localization

Analysis Start End Length
TMHMM 43 65 22
TMHMM 203 225 22
TMHMM 129 151 22
TMHMM 164 183 19
TMHMM 78 100 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting