Protein : Qrob_P0427270.2 Q. robur
Protein Identifier  ? Qrob_P0427270.2 Organism . Name  Quercus robur
Score  92.1 Score Type  egn
Protein Description  (M=2) 2.5.1.75 - tRNA dimethylallyltransferase. Code Enzyme  EC:2.5.1.75
Gene Prediction Quality  validated Protein length 

Sequence

Length: 447  
Kegg Orthology  K00791
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0008033 tRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103326073 20 438 + 419 Gaps:4 92.76 456 82.03 0.0 tRNA dimethylallyltransferase 9
blastp_kegg lcl|pper:PRUPE_ppa005482mg 20 438 + 419 Gaps:4 92.36 458 81.09 0.0 hypothetical protein
blastp_kegg lcl|mdm:103448749 20 442 + 423 Gaps:4 91.83 465 78.45 0.0 tRNA dimethylallyltransferase 9
blastp_kegg lcl|pxb:103932391 20 442 + 423 Gaps:4 91.83 465 78.22 0.0 tRNA dimethylallyltransferase 9
blastp_kegg lcl|vvi:100245121 5 434 + 430 Gaps:11 98.21 447 78.13 0.0 tRNA dimethylallyltransferase 9-like
blastp_kegg lcl|rcu:RCOM_1520400 10 435 + 426 Gaps:8 94.62 446 79.38 0.0 ATP binding protein putative (EC:2.5.1.8)
blastp_kegg lcl|tcc:TCM_031717 10 435 + 426 Gaps:9 96.88 449 77.70 0.0 Isopentenyltransferase 9 isoform 1
blastp_kegg lcl|pop:POPTR_0001s38570g 2 437 + 436 Gaps:28 97.98 445 76.38 0.0 POPTRDRAFT_815805 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10008222mg 10 437 + 428 Gaps:7 94.73 455 75.41 0.0 hypothetical protein
blastp_kegg lcl|gmx:100808814 5 434 + 430 Gaps:17 97.99 448 75.63 0.0 tRNA dimethylallyltransferase 9-like
blastp_pdb 3exa_D 36 384 + 349 Gaps:73 96.89 322 39.10 4e-48 mol:protein length:322 tRNA delta(2)-isopentenylpyrophosphate transf
blastp_pdb 3exa_C 36 384 + 349 Gaps:73 96.89 322 39.10 4e-48 mol:protein length:322 tRNA delta(2)-isopentenylpyrophosphate transf
blastp_pdb 3exa_B 36 384 + 349 Gaps:73 96.89 322 39.10 4e-48 mol:protein length:322 tRNA delta(2)-isopentenylpyrophosphate transf
blastp_pdb 3exa_A 36 384 + 349 Gaps:73 96.89 322 39.10 4e-48 mol:protein length:322 tRNA delta(2)-isopentenylpyrophosphate transf
blastp_pdb 2qgn_A 36 384 + 349 Gaps:73 96.89 322 39.10 4e-48 mol:protein length:322 tRNA delta(2)-isopentenylpyrophosphate transf
blastp_pdb 3foz_B 31 368 + 338 Gaps:43 93.99 316 34.68 1e-41 mol:protein length:316 tRNA delta(2)-isopentenylpyrophosphate transf
blastp_pdb 3foz_A 31 368 + 338 Gaps:43 93.99 316 34.68 1e-41 mol:protein length:316 tRNA delta(2)-isopentenylpyrophosphate transf
blastp_pdb 2zxu_B 31 368 + 338 Gaps:43 93.99 316 34.68 1e-41 mol:protein length:316 tRNA delta(2)-isopentenylpyrophosphate transf
blastp_pdb 2zxu_A 31 368 + 338 Gaps:43 93.99 316 34.68 1e-41 mol:protein length:316 tRNA delta(2)-isopentenylpyrophosphate transf
blastp_pdb 2zm5_B 31 368 + 338 Gaps:43 93.99 316 34.68 1e-41 mol:protein length:316 tRNA delta(2)-isopentenylpyrophosphate transf
blastp_uniprot_sprot sp|Q9C5J6|IPT9_ARATH 6 438 + 433 Gaps:12 95.68 463 66.59 0.0 tRNA dimethylallyltransferase 9 OS Arabidopsis thaliana GN IPT9 PE 2 SV 1
blastp_uniprot_sprot sp|Q6MBT2|MIAA_PARUW 21 365 + 345 Gaps:48 90.99 344 43.13 6e-63 tRNA dimethylallyltransferase OS Protochlamydia amoebophila (strain UWE25) GN miaA PE 3 SV 1
blastp_uniprot_sprot sp|B5EGD5|MIAA1_GEOBB 32 378 + 347 Gaps:48 98.37 306 42.52 2e-58 tRNA dimethylallyltransferase 1 OS Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN miaA1 PE 3 SV 1
blastp_uniprot_sprot sp|A5GEV6|MIAA2_GEOUR 31 380 + 350 Gaps:44 99.35 310 40.26 3e-56 tRNA dimethylallyltransferase 2 OS Geobacter uraniireducens (strain Rf4) GN miaA2 PE 3 SV 1
blastp_uniprot_sprot sp|B1IM66|MIAA_CLOBK 39 367 + 329 Gaps:41 93.25 311 39.66 2e-53 tRNA dimethylallyltransferase OS Clostridium botulinum (strain Okra / Type B1) GN miaA PE 3 SV 1
blastp_uniprot_sprot sp|Q607R4|MIAA_METCA 39 368 + 330 Gaps:42 92.95 312 40.34 3e-53 tRNA dimethylallyltransferase OS Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN miaA PE 3 SV 1
blastp_uniprot_sprot sp|C1FNT7|MIAA_CLOBJ 39 367 + 329 Gaps:41 93.25 311 40.00 6e-53 tRNA dimethylallyltransferase OS Clostridium botulinum (strain Kyoto / Type A2) GN miaA PE 3 SV 1
blastp_uniprot_sprot sp|B1KSA1|MIAA_CLOBM 39 367 + 329 Gaps:41 93.25 311 40.00 1e-52 tRNA dimethylallyltransferase OS Clostridium botulinum (strain Loch Maree / Type A3) GN miaA PE 3 SV 1
blastp_uniprot_sprot sp|A7GE43|MIAA_CLOBL 39 367 + 329 Gaps:41 93.25 311 39.31 7e-52 tRNA dimethylallyltransferase OS Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN miaA PE 3 SV 1
blastp_uniprot_sprot sp|A4IMI5|MIAA_GEOTN 37 386 + 350 Gaps:51 99.37 315 38.02 9e-52 tRNA dimethylallyltransferase OS Geobacillus thermodenitrificans (strain NG80-2) GN miaA PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 33 222 190 PTHR11088:SF24 none none none
PANTHER 241 434 194 PTHR11088:SF24 none none none
PANTHER 241 434 194 PTHR11088 none none none
Pfam 71 365 295 PF01715 "KEGG:00908+2.5.1.75","MetaCyc:PWY-2781" IPP transferase IPR018022
PANTHER 33 222 190 PTHR11088 none none none
Hamap 39 374 336 MF_00185 "KEGG:00908+2.5.1.75","MetaCyc:PWY-2781" tRNA dimethylallyltransferase [miaA]. IPR018022
SUPERFAMILY 39 166 128 SSF52540 none none IPR027417
Gene3D 267 357 91 G3DSA:1.10.287.890 none none none
SUPERFAMILY 35 72 38 SSF52540 none none IPR027417
SUPERFAMILY 310 372 63 SSF52540 none none IPR027417
TIGRFAM 39 216 178 TIGR00174 "KEGG:00908+2.5.1.75","MetaCyc:PWY-2781" miaA: tRNA dimethylallyltransferase IPR018022
Gene3D 35 209 175 G3DSA:3.40.50.300 none none IPR027417

0 Localization

15 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting