Protein : Qrob_P0427140.2 Q. robur
Protein Identifier  ? Qrob_P0427140.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=28) K01213 - galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 416  
Kegg Orthology  K01213
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_002289 1 415 + 415 Gaps:31 98.77 405 61.00 9e-176 Polygalacturonase
blastp_kegg lcl|tcc:TCM_002294 1 415 + 415 Gaps:31 77.67 515 61.75 1e-174 Pectin lyase-like superfamily protein putative
blastp_kegg lcl|cmo:103498752 26 415 + 390 Gaps:24 85.98 428 63.32 2e-168 exopolygalacturonase-like
blastp_kegg lcl|pop:POPTR_0019s09500g 1 411 + 411 Gaps:32 100.00 393 61.58 1e-167 hypothetical protein
blastp_kegg lcl|mdm:103442964 1 415 + 415 Gaps:31 100.00 400 59.75 1e-166 exopolygalacturonase-like
blastp_kegg lcl|mdm:103442965 1 415 + 415 Gaps:31 100.00 400 59.75 7e-166 exopolygalacturonase-like
blastp_kegg lcl|pxb:103927064 1 411 + 411 Gaps:30 99.00 399 60.76 9e-165 exopolygalacturonase-like
blastp_kegg lcl|mdm:103453494 1 415 + 415 Gaps:30 100.00 399 59.65 1e-164 exopolygalacturonase-like
blastp_kegg lcl|pop:POPTR_0019s09510g 18 411 + 394 Gaps:29 100.00 373 63.81 1e-164 hypothetical protein
blastp_kegg lcl|mdm:103412274 1 415 + 415 Gaps:30 100.00 399 59.65 2e-164 exopolygalacturonase-like
blastp_pdb 1bhe_A 114 328 + 215 Gaps:25 53.19 376 34.50 2e-18 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1nhc_F 213 398 + 186 Gaps:13 53.27 336 34.08 1e-12 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 213 398 + 186 Gaps:13 53.27 336 34.08 1e-12 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_D 213 398 + 186 Gaps:13 53.27 336 34.08 1e-12 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_C 213 398 + 186 Gaps:13 53.27 336 34.08 1e-12 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_B 213 398 + 186 Gaps:13 53.27 336 34.08 1e-12 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_A 213 398 + 186 Gaps:13 53.27 336 34.08 1e-12 mol:protein length:336 Polygalacturonase I
blastp_pdb 1rmg_A 28 380 + 353 Gaps:54 74.64 422 26.98 3e-12 mol:protein length:422 RHAMNOGALACTURONASE A
blastp_pdb 2iq7_G 213 328 + 116 Gaps:4 33.63 339 38.60 3e-12 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_F 213 328 + 116 Gaps:4 33.63 339 38.60 3e-12 mol:protein length:339 endopolygalacturonase
blastp_uniprot_sprot sp|Q05967|PGLR_TOBAC 1 415 + 415 Gaps:29 98.99 396 52.81 3e-147 Polygalacturonase OS Nicotiana tabacum GN PG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q39786|PGLR_GOSHI 1 412 + 412 Gaps:32 97.30 407 53.28 1e-145 Polygalacturonase OS Gossypium hirsutum GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q6H9K0|PGLR2_PLAAC 24 408 + 385 Gaps:27 97.08 377 55.46 8e-145 Exopolygalacturonase (Fragment) OS Platanus acerifolia GN plaa2 PE 1 SV 1
blastp_uniprot_sprot sp|P24548|PGLR_OENOR 39 415 + 377 Gaps:27 98.90 362 57.82 3e-144 Exopolygalacturonase (Fragment) OS Oenothera organensis PE 2 SV 1
blastp_uniprot_sprot sp|Q39766|PGLR_GOSBA 1 412 + 412 Gaps:32 97.30 407 52.78 8e-144 Polygalacturonase OS Gossypium barbadense GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q40312|PGLR_MEDSA 3 411 + 409 Gaps:38 92.87 421 53.20 1e-136 Polygalacturonase OS Medicago sativa PE 2 SV 1
blastp_uniprot_sprot sp|P35337|PGLR_BRANA 1 411 + 411 Gaps:31 97.23 397 51.81 7e-133 Polygalacturonase OS Brassica napus PE 2 SV 1
blastp_uniprot_sprot sp|P49063|PGLR2_ARATH 17 412 + 396 Gaps:28 85.14 444 48.68 4e-119 Exopolygalacturonase clone GBGA483 OS Arabidopsis thaliana GN At3g07850 PE 2 SV 2
blastp_uniprot_sprot sp|P26216|PGLR1_MAIZE 27 411 + 385 Gaps:30 90.00 410 39.84 9e-89 Exopolygalacturonase OS Zea mays GN PG1 PE 1 SV 1
blastp_uniprot_sprot sp|P35339|PGLR3_MAIZE 27 411 + 385 Gaps:30 90.00 410 40.11 9e-89 Exopolygalacturonase OS Zea mays GN PG2C PE 2 SV 1

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 7 142 136 PTHR31375 none none none
PANTHER 7 142 136 PTHR31375:SF2 none none none
SUPERFAMILY 159 412 254 SSF51126 none none IPR011050
SUPERFAMILY 13 127 115 SSF51126 none none IPR011050
Pfam 164 402 239 PF00295 none Glycosyl hydrolases family 28 IPR000743
Pfam 52 146 95 PF00295 none Glycosyl hydrolases family 28 IPR000743
ProSitePatterns 252 265 14 PS00502 none Polygalacturonase active site. IPR000743
PANTHER 166 412 247 PTHR31375 none none none
SMART 372 400 29 SM00710 none Parallel beta-helix repeats IPR006626
SMART 222 243 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 195 221 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 305 326 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 275 296 22 SM00710 none Parallel beta-helix repeats IPR006626
PANTHER 166 412 247 PTHR31375:SF2 none none none
Phobius 1 24 24 SIGNAL_PEPTIDE none Signal peptide region none
Gene3D 11 127 117 G3DSA:2.160.20.10 none none IPR012334
Gene3D 159 413 255 G3DSA:2.160.20.10 none none IPR012334
Phobius 7 16 10 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 17 24 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 25 415 391 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

2 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 24 23
SignalP_EUK 1 24 23

15 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting