Protein : Qrob_P0426040.2 Q. robur
Protein Identifier  ? Qrob_P0426040.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02981 - small subunit ribosomal protein S2e Gene Prediction Quality  validated
Protein length 

Sequence

Length: 273  
Kegg Orthology  K02981
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101310814 35 272 + 238 Gaps:2 85.51 276 92.37 8e-155 40S ribosomal protein S2-4-like
blastp_kegg lcl|pvu:PHAVU_002G321400g 36 272 + 237 Gaps:5 86.76 272 92.37 1e-150 hypothetical protein
blastp_kegg lcl|tcc:TCM_040724 35 266 + 232 Gaps:1 86.94 268 91.42 2e-150 Ribosomal protein S5 family protein isoform 1
blastp_kegg lcl|mtr:MTR_8g105340 36 272 + 237 Gaps:5 84.59 279 91.95 4e-150 40S ribosomal protein S2
blastp_kegg lcl|gmx:100797105 37 272 + 236 Gaps:5 86.40 272 92.77 5e-150 40S ribosomal protein S2-4-like
blastp_kegg lcl|tcc:TCM_040726 35 266 + 232 Gaps:1 86.62 269 91.42 6e-150 Ribosomal protein S5 family protein
blastp_kegg lcl|pvu:PHAVU_003G018300g 36 272 + 237 Gaps:5 87.08 271 91.95 9e-150 hypothetical protein
blastp_kegg lcl|cmo:103499519 36 272 + 237 Gaps:2 87.45 271 89.87 1e-149 40S ribosomal protein S2-4-like
blastp_kegg lcl|cam:101493001 36 272 + 237 Gaps:5 85.51 276 91.95 1e-149 40S ribosomal protein S2-3-like
blastp_kegg lcl|cmo:103486852 37 266 + 230 Gaps:2 86.25 269 90.95 5e-149 40S ribosomal protein S2-3-like
blastp_pdb 3iz6_E 35 272 + 238 Gaps:1 86.50 274 82.70 1e-144 mol:protein length:274 40S ribosomal protein S2 (S5p)
blastp_pdb 3u5g_C 37 251 + 215 none 84.65 254 66.05 2e-102 mol:protein length:254 40S ribosomal protein S2
blastp_pdb 3u5c_C 37 251 + 215 none 84.65 254 66.05 2e-102 mol:protein length:254 40S ribosomal protein S2
blastp_pdb 3o30_B 37 251 + 215 none 84.65 254 66.05 2e-102 mol:protein length:254 40S ribosomal protein S2
blastp_pdb 3o2z_B 37 251 + 215 none 84.65 254 66.05 2e-102 mol:protein length:254 40S ribosomal protein S2
blastp_pdb 3izb_E 37 251 + 215 none 84.65 254 66.05 2e-102 mol:protein length:254 40S ribosomal protein rpS2 (S5p)
blastp_pdb 2zkq_e 74 251 + 178 Gaps:1 100.00 179 77.65 3e-97 mol:protein length:179 40S Ribosomal protein S2e
blastp_pdb 2xzn_E 14 269 + 256 Gaps:19 86.82 296 56.42 3e-94 mol:protein length:296 RIBOSOMAL PROTEIN S5 CONTAINING PROTEIN
blastp_pdb 2xzm_E 14 269 + 256 Gaps:19 86.82 296 56.42 3e-94 mol:protein length:296 RIBOSOMAL PROTEIN S5 CONTAINING PROTEIN
blastp_pdb 3jyv_E 81 238 + 158 none 97.53 162 68.35 9e-75 mol:protein length:162 40S ribosomal protein S2
blastp_uniprot_sprot sp|Q8L8Y0|RS21_ARATH 36 254 + 219 Gaps:1 77.46 284 91.36 4e-145 40S ribosomal protein S2-1 OS Arabidopsis thaliana GN RPS2A PE 2 SV 2
blastp_uniprot_sprot sp|Q93VB8|RS22_ARATH 37 254 + 218 Gaps:1 77.11 284 91.78 5e-145 40S ribosomal protein S2-2 OS Arabidopsis thaliana GN RPS2B PE 2 SV 1
blastp_uniprot_sprot sp|Q9SCM3|RS24_ARATH 37 271 + 235 Gaps:1 85.51 276 86.44 6e-144 40S ribosomal protein S2-4 OS Arabidopsis thaliana GN RPS2D PE 2 SV 1
blastp_uniprot_sprot sp|P49688|RS23_ARATH 36 254 + 219 Gaps:1 77.19 285 90.45 2e-143 40S ribosomal protein S2-3 OS Arabidopsis thaliana GN RPS2C PE 1 SV 2
blastp_uniprot_sprot sp|Q90YS3|RS2_ICTPU 1 255 + 255 Gaps:5 93.86 277 70.38 1e-124 40S ribosomal protein S2 OS Ictalurus punctatus GN rps2 PE 2 SV 1
blastp_uniprot_sprot sp|P27952|RS2_RAT 35 255 + 221 Gaps:1 75.77 293 76.58 2e-120 40S ribosomal protein S2 OS Rattus norvegicus GN Rps2 PE 1 SV 1
blastp_uniprot_sprot sp|P25444|RS2_MOUSE 35 255 + 221 Gaps:1 75.77 293 76.58 2e-120 40S ribosomal protein S2 OS Mus musculus GN Rps2 PE 2 SV 3
blastp_uniprot_sprot sp|P31009|RS2_DROME 35 260 + 226 Gaps:1 85.02 267 73.13 3e-120 40S ribosomal protein S2 OS Drosophila melanogaster GN RpS2 PE 1 SV 2
blastp_uniprot_sprot sp|P15880|RS2_HUMAN 35 255 + 221 Gaps:1 75.77 293 76.58 4e-120 40S ribosomal protein S2 OS Homo sapiens GN RPS2 PE 1 SV 2
blastp_uniprot_sprot sp|O18789|RS2_BOVIN 35 255 + 221 Gaps:1 75.77 293 76.58 5e-120 40S ribosomal protein S2 OS Bos taurus GN RPS2 PE 2 SV 2

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 79 144 66 G3DSA:3.30.160.20 none none IPR014720
ProSitePatterns 99 131 33 PS00585 none Ribosomal protein S5 signature. IPR018192
PANTHER 5 256 252 PTHR13718 none none IPR000851
SUPERFAMILY 158 238 81 SSF54211 none none IPR020568
Gene3D 153 228 76 G3DSA:3.30.230.10 none none IPR014721
Pfam 82 147 66 PF00333 none Ribosomal protein S5, N-terminal domain IPR013810
Pfam 164 230 67 PF03719 none Ribosomal protein S5, C-terminal domain IPR005324
SUPERFAMILY 76 147 72 SSF54768 none none none
TIGRFAM 36 242 207 TIGR01020 none uS5_euk_arch: ribosomal protein uS5 IPR005711
ProSiteProfiles 82 145 64 PS50881 none S5 double stranded RNA-binding domain profile. IPR013810

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting