Protein : Qrob_P0422960.2 Q. robur
Protein Identifier  ? Qrob_P0422960.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02721 - photosystem II PsbW protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 138  
Kegg Orthology  K02721
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0009507 chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
GO:0009523 photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0002s04520g 1 137 + 137 Gaps:4 100.00 133 72.18 5e-58 POPTRDRAFT_830089 hypothetical protein
blastp_kegg lcl|pxb:103957316 1 137 + 137 Gaps:5 100.00 132 71.97 2e-56 photosystem II reaction center W protein chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10024455mg 1 137 + 137 Gaps:2 100.00 135 77.04 3e-56 hypothetical protein
blastp_kegg lcl|cit:102629478 1 137 + 137 Gaps:2 100.00 135 77.04 3e-56 photosystem II reaction center W protein chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_001G157100g 1 137 + 137 Gaps:2 100.00 135 74.81 3e-55 hypothetical protein
blastp_kegg lcl|mdm:103445710 1 137 + 137 Gaps:5 100.00 132 72.73 2e-54 photosystem II reaction center W protein chloroplastic-like
blastp_kegg lcl|gmx:100306223 1 137 + 137 Gaps:5 100.00 132 76.52 7e-54 uncharacterized LOC100306223
blastp_kegg lcl|tcc:TCM_046978 1 137 + 137 Gaps:2 100.00 135 73.33 7e-54 Photosystem II reaction center W
blastp_kegg lcl|pop:POPTR_0005s24030g 13 137 + 125 Gaps:4 90.30 134 74.38 3e-53 POPTRDRAFT_715100 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa012535mg 1 137 + 137 Gaps:4 80.61 165 75.19 6e-53 hypothetical protein
blastp_uniprot_sprot sp|Q41387|PSBW_SPIOL 1 137 + 137 none 100.00 137 67.15 8e-51 Photosystem II reaction center W protein chloroplastic OS Spinacia oleracea GN psbW PE 1 SV 1
blastp_uniprot_sprot sp|Q39194|PSBW_ARATH 1 137 + 137 Gaps:8 100.00 133 68.42 9e-49 Photosystem II reaction center W protein chloroplastic OS Arabidopsis thaliana GN PSBW PE 1 SV 2
blastp_uniprot_sprot sp|Q9SPI9|PSBW_CHLRE 35 137 + 103 Gaps:6 87.83 115 40.59 2e-16 Photosystem II reaction center W protein chloroplastic OS Chlamydomonas reinhardtii GN psbW PE 1 SV 1
blastp_uniprot_sprot sp|Q5ZBY9|PSBW_ORYSJ 32 134 + 103 Gaps:8 79.84 124 63.64 7e-16 Photosystem II reaction center W protein chloroplastic OS Oryza sativa subsp. japonica GN PSBW PE 2 SV 1
rpsblast_cdd gnl|CDD|177712 1 137 + 137 Gaps:4 100.00 137 75.18 1e-49 PLN00092 PLN00092 photosystem I reaction center subunit V (PsaG) Provisional.
rpsblast_cdd gnl|CDD|191690 1 137 + 137 Gaps:5 100.00 136 50.00 4e-34 pfam07123 PsbW Photosystem II reaction centre W protein (PsbW). This family consists of several plant specific photosystem II reaction centre W (PsbW) proteins. PsbW is a nuclear-encoded protein located in the thylakoid membrane of the chloroplast. PsbW is a core component of photosystem II but not photosystem I. This family does not appear to be related to pfam03912.
rpsblast_cdd gnl|CDD|177704 1 137 + 137 Gaps:15 100.00 128 58.59 9e-27 PLN00077 PLN00077 photosystem II reaction centre W protein Provisional.
rpsblast_cdd gnl|CDD|177705 74 137 + 64 Gaps:3 100.00 67 62.69 1e-18 PLN00082 PLN00082 photosystem II reaction centre W protein (PsbW) Provisional.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 1 137 137 PF07123 none Photosystem II reaction centre W protein (PsbW) IPR009806
Phobius 85 103 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 124 137 14 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 61 61 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 104 123 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 62 84 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

2 Localization

Analysis Start End Length
TMHMM 105 127 22
TMHMM 63 85 22

0 Qtllist

0 Targeting