Protein : Qrob_P0415270.2 Q. robur
Protein Identifier  ? Qrob_P0415270.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=6) K08238 - xyloglucan 6-xylosyltransferase [EC:2.4.2.39] Code Enzyme  EC:2.4.2.39
Gene Prediction Quality  validated Protein length 

Sequence

Length: 398  
Kegg Orthology  K08238
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016757 transferase activity, transferring glycosyl groups Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0005794 Golgi apparatus A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100263916 10 393 + 384 Gaps:44 94.67 450 72.77 0.0 putative glycosyltransferase 3-like
blastp_kegg lcl|csv:101203867 2 397 + 396 Gaps:45 95.00 460 70.71 0.0 putative glycosyltransferase 5-like
blastp_kegg lcl|csv:101204112 2 397 + 396 Gaps:45 95.00 460 70.48 0.0 putative glycosyltransferase 3-like
blastp_kegg lcl|csv:101224606 2 397 + 396 Gaps:45 95.00 460 70.48 0.0 putative glycosyltransferase 3-like
blastp_kegg lcl|csv:101224833 2 397 + 396 Gaps:45 95.00 460 70.48 0.0 putative glycosyltransferase 5-like
blastp_kegg lcl|pop:POPTR_0015s07290g 15 397 + 383 Gaps:42 92.94 453 71.50 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0012s07020g 7 397 + 391 Gaps:43 95.13 452 70.70 0.0 POPTRDRAFT_1095339 hypothetical protein
blastp_kegg lcl|pmum:103338473 8 397 + 390 Gaps:48 94.99 459 69.72 0.0 putative glycosyltransferase 5
blastp_kegg lcl|pmum:103338470 8 397 + 390 Gaps:48 94.99 459 69.72 0.0 putative glycosyltransferase 5
blastp_kegg lcl|tcc:TCM_014107 5 397 + 393 Gaps:45 94.35 460 70.05 0.0 Galactosyl transferase GMA12/MNN10 family protein
blastp_uniprot_sprot sp|Q9LF80|GT3_ARATH 7 386 + 380 Gaps:43 92.12 457 68.88 0.0 Putative glycosyltransferase 3 OS Arabidopsis thaliana GN GT3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CA75|GT5_ARATH 22 386 + 365 Gaps:44 89.06 457 70.52 0.0 Putative glycosyltransferase 5 OS Arabidopsis thaliana GN GT5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M9U0|GT4_ARATH 53 387 + 335 Gaps:1 65.50 513 77.68 0.0 Putative glycosyltransferase 4 OS Arabidopsis thaliana GN GT4 PE 2 SV 1
blastp_uniprot_sprot sp|O22775|GT2_ARATH 53 384 + 332 Gaps:2 72.45 461 65.87 2e-171 Putative glycosyltransferase 2 OS Arabidopsis thaliana GN GT2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LZJ3|XT1_ARATH 58 381 + 324 Gaps:2 70.87 460 67.48 1e-168 Xyloglucan 6-xylosyltransferase OS Arabidopsis thaliana GN XT1 PE 1 SV 1
blastp_uniprot_sprot sp|Q564G7|GMGT1_CYATE 53 362 + 310 Gaps:33 77.93 435 44.25 4e-100 Galactomannan galactosyltransferase 1 OS Cyamopsis tetragonoloba GN GMGT1 PE 1 SV 1
blastp_uniprot_sprot sp|O81007|GT7_ARATH 53 360 + 308 Gaps:39 76.39 449 43.44 2e-94 Putative glycosyltransferase 7 OS Arabidopsis thaliana GN GT7 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SZG1|GT6_ARATH 53 360 + 308 Gaps:39 79.40 432 42.57 8e-93 Glycosyltransferase 6 OS Arabidopsis thaliana GN GT6 PE 2 SV 1
blastp_uniprot_sprot sp|O94622|YBKD_SCHPO 69 340 + 272 Gaps:92 68.27 375 29.30 9e-10 Uncharacterized alpha-1 2-galactosyltransferase C1289.13c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBC1289.13c PE 3 SV 1
rpsblast_cdd gnl|CDD|178724 18 386 + 369 Gaps:50 97.20 429 62.83 0.0 PLN03182 PLN03182 xyloglucan 6-xylosyltransferase Provisional.
rpsblast_cdd gnl|CDD|178723 53 378 + 326 Gaps:46 78.15 453 47.74 1e-114 PLN03181 PLN03181 glycosyltransferase Provisional.
rpsblast_cdd gnl|CDD|203296 87 327 + 241 Gaps:58 100.00 239 38.49 1e-62 pfam05637 Glyco_transf_34 galactosyl transferase GMA12/MNN10 family. This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of C. elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.
rpsblast_kog gnl|CDD|39945 54 359 + 306 Gaps:17 82.14 364 41.81 4e-95 KOG4748 KOG4748 KOG4748 Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism Cell wall/membrane/envelope biogenesis].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 46 397 352 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 88 326 239 PF05637 none galactosyl transferase GMA12/MNN10 family IPR008630
PANTHER 2 386 385 PTHR31311:SF4 none none none
PANTHER 2 386 385 PTHR31311 none none none
Phobius 27 45 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 26 26 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

1 Localization

Analysis Start End Length
TMHMM 27 49 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting