Protein : Qrob_P0413750.2 Q. robur
Protein Identifier  ? Qrob_P0413750.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=8) PF00538 - linker histone H1 and H5 family Gene Prediction Quality  validated
Protein length 

Sequence

Length: 185  
Kegg Orthology  K09422
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0006334 nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:778165 11 182 + 172 none 57.72 298 73.84 8e-54 MYB130 MYB transcription factor MYB130
blastp_kegg lcl|pmum:103336532 10 178 + 169 none 56.15 301 82.25 2e-53 telomere repeat-binding factor 2
blastp_kegg lcl|pper:PRUPE_ppa009220mg 10 178 + 169 none 56.15 301 82.25 2e-53 hypothetical protein
blastp_kegg lcl|cit:102625292 10 184 + 175 Gaps:1 53.87 323 72.99 2e-52 telomere repeat-binding factor 2-like
blastp_kegg lcl|gmx:100796539 11 183 + 173 none 58.05 298 72.25 4e-52 telomere repeat-binding factor 2-like
blastp_kegg lcl|pvu:PHAVU_002G010300g 11 181 + 171 none 57.19 299 72.51 1e-51 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10026089mg 10 178 + 169 Gaps:1 52.17 322 74.40 7e-51 hypothetical protein
blastp_kegg lcl|fve:101314601 10 178 + 169 none 56.33 300 72.78 2e-50 telomere repeat-binding factor 2-like
blastp_kegg lcl|pxb:103945760 10 178 + 169 none 55.59 304 79.29 2e-49 telomere repeat-binding factor 1
blastp_kegg lcl|mdm:103404119 10 178 + 169 Gaps:3 54.07 307 76.51 5e-48 MYBR19 telomere repeat-binding factor 2
blastp_uniprot_sprot sp|Q9FJW5|TRB2_ARATH 12 177 + 166 Gaps:1 55.85 299 61.68 1e-36 Telomere repeat-binding factor 2 OS Arabidopsis thaliana GN TRB2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8VWK4|TRB1_ARATH 10 177 + 168 Gaps:5 57.00 300 55.56 4e-27 Telomere repeat-binding factor 1 OS Arabidopsis thaliana GN TRB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M2X3|TRB3_ARATH 12 177 + 166 Gaps:1 55.93 295 52.73 2e-23 Telomere repeat-binding factor 3 OS Arabidopsis thaliana GN TRB3 PE 1 SV 1
blastp_uniprot_sprot sp|P23444|H1_MAIZE 15 78 + 64 Gaps:2 26.83 246 43.94 2e-10 Histone H1 OS Zea mays PE 2 SV 2
blastp_uniprot_sprot sp|F4IEY4|TRB5_ARATH 10 179 + 170 Gaps:27 56.10 287 32.92 5e-09 Telomere repeat-binding factor 5 OS Arabidopsis thaliana GN At1g72740 PE 2 SV 1
blastp_uniprot_sprot sp|F4I7L1|TRB4_ARATH 10 156 + 147 Gaps:10 46.28 296 33.58 2e-08 Telomere repeat-binding factor 4 OS Arabidopsis thaliana GN At1g17520 PE 2 SV 2
blastp_uniprot_sprot sp|P26569|H12_ARATH 13 76 + 64 Gaps:1 23.81 273 40.00 1e-06 Histone H1.2 OS Arabidopsis thaliana GN At2g30620 PE 1 SV 1
blastp_uniprot_sprot sp|P27806|H1_WHEAT 15 75 + 61 Gaps:2 26.47 238 41.27 6e-06 Histone H1 OS Triticum aestivum PE 2 SV 2
rpsblast_cdd gnl|CDD|197772 12 70 + 59 Gaps:1 90.91 66 43.33 4e-09 smart00526 H15 Domain in histone families 1 and 5.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 9 71 63 SM00526 none Domain in histone families 1 and 5 IPR005818
ProSiteProfiles 8 76 69 PS51504 none Linker histone H1/H5 globular (H15) domain profile. IPR005818
Pfam 14 69 56 PF00538 none linker histone H1 and H5 family IPR005818
SUPERFAMILY 11 85 75 SSF46785 none none none
Gene3D 11 78 68 G3DSA:1.10.10.10 none none IPR011991
Coils 131 169 39 Coil none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting