Protein : Qrob_P0413680.2 Q. robur
Protein Identifier  ? Qrob_P0413680.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR31636:SF9 - PROTEIN SHORT-ROOT (PTHR31636:SF9) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 485  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0008356 asymmetric cell division The asymmetric division of cells to produce two daughter cells with different developmental potentials. It is of fundamental significance for the generation of cell diversity.
GO:0009956 radial pattern formation The regionalization process that results in defined areas around a point in which specific types of cell differentiation will occur.
GO:0048366 leaf development The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100263197 1 484 + 484 Gaps:16 100.00 494 82.79 0.0 protein SHORT-ROOT-like
blastp_kegg lcl|cit:102623584 1 484 + 484 Gaps:10 100.00 490 80.41 0.0 protein SHORT-ROOT-like
blastp_kegg lcl|tcc:TCM_000801 1 484 + 484 Gaps:23 100.00 505 80.99 0.0 GRAS family transcription factor
blastp_kegg lcl|cic:CICLE_v10025470mg 1 484 + 484 Gaps:10 100.00 490 79.80 0.0 hypothetical protein
blastp_kegg lcl|pmum:103336622 1 484 + 484 Gaps:45 100.00 509 75.83 0.0 protein SHORT-ROOT
blastp_kegg lcl|pper:PRUPE_ppa004454mg 1 484 + 484 Gaps:45 100.00 509 75.64 0.0 hypothetical protein
blastp_kegg lcl|mdm:103415371 1 484 + 484 Gaps:32 100.00 508 75.00 0.0 protein SHORT-ROOT-like
blastp_kegg lcl|pxb:103945756 1 484 + 484 Gaps:43 100.00 507 75.94 0.0 protein SHORT-ROOT-like
blastp_kegg lcl|mdm:103404008 1 484 + 484 Gaps:43 100.00 507 75.35 0.0 protein SHORT-ROOT
blastp_kegg lcl|mdm:103455667 1 484 + 484 Gaps:43 100.00 507 75.35 0.0 protein SHORT-ROOT-like
blastp_uniprot_sprot sp|Q9SZF7|SHR_ARATH 1 484 + 484 Gaps:50 99.81 531 62.45 0.0 Protein SHORT-ROOT OS Arabidopsis thaliana GN SHR PE 1 SV 1
blastp_uniprot_sprot sp|A2YN56|SHR1_ORYSI 30 484 + 455 Gaps:73 87.38 602 52.66 6e-166 Protein SHORT-ROOT 1 OS Oryza sativa subsp. indica GN SHR1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8H2X8|SHR1_ORYSJ 30 484 + 455 Gaps:73 87.38 602 52.66 5e-164 Protein SHORT-ROOT 1 OS Oryza sativa subsp. japonica GN SHR1 PE 1 SV 2
blastp_uniprot_sprot sp|Q75I13|SHR2_ORYSJ 104 484 + 381 Gaps:44 69.15 603 58.99 2e-154 Protein SHORT-ROOT 2 OS Oryza sativa subsp. japonica GN SHR2 PE 1 SV 1
blastp_uniprot_sprot sp|A2XIA8|SHR2_ORYSI 104 484 + 381 Gaps:44 69.15 603 58.51 2e-153 Protein SHORT-ROOT 2 OS Oryza sativa subsp. indica GN SHR2 PE 3 SV 1
blastp_uniprot_sprot sp|Q9S7H5|SCL21_ARATH 108 483 + 376 Gaps:25 87.41 413 31.86 1e-57 Scarecrow-like protein 21 OS Arabidopsis thaliana GN SCL21 PE 1 SV 1
blastp_uniprot_sprot sp|Q8GVE1|CIGR2_ORYSJ 107 482 + 376 Gaps:26 67.65 544 32.61 2e-55 Chitin-inducible gibberellin-responsive protein 2 OS Oryza sativa subsp. japonica GN CIGR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8H125|SCL5_ARATH 108 483 + 376 Gaps:20 61.64 597 32.07 5e-54 Scarecrow-like protein 5 OS Arabidopsis thaliana GN SCL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LDL7|PAT1_ARATH 109 483 + 375 Gaps:27 75.10 490 28.26 2e-51 Scarecrow-like transcription factor PAT1 OS Arabidopsis thaliana GN PAT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SDQ3|SCL1_ARATH 75 483 + 409 Gaps:59 66.78 593 33.59 4e-50 Scarecrow-like protein 1 OS Arabidopsis thaliana GN SCL1 PE 2 SV 1
rpsblast_cdd gnl|CDD|202673 107 483 + 377 Gaps:19 99.46 372 36.49 1e-98 pfam03514 GRAS GRAS family transcription factor. Sequence analysis of the products of the GRAS (GAI RGA SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect loss of a ground tissue layer in the root. The PAT1 protein is involved in phytochrome A signal transduction.

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 107 483 377 PF03514 none GRAS domain family IPR005202
PANTHER 23 484 462 PTHR31636 none none none
ProSiteProfiles 79 463 385 PS50985 none GRAS family profile. IPR005202
PANTHER 23 484 462 PTHR31636:SF9 none none IPR030019

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting