Protein : Qrob_P0411210.2 Q. robur
Protein Identifier  ? Qrob_P0411210.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) K02997 - small subunit ribosomal protein S9e Gene Prediction Quality  validated
Protein length 

Sequence

Length: 198  
Kegg Orthology  K02997
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015935 small ribosomal subunit The smaller of the two subunits of a ribosome.
GO:0019843 rRNA binding Interacting selectively and non-covalently with ribosomal RNA.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103498678 1 197 + 197 none 100.00 197 96.95 2e-137 40S ribosomal protein S9-2
blastp_kegg lcl|cmo:103489104 1 197 + 197 none 100.00 197 96.95 2e-137 40S ribosomal protein S9-2
blastp_kegg lcl|csv:101230908 1 197 + 197 none 100.00 197 96.95 2e-137 40S ribosomal protein S9-2-like
blastp_kegg lcl|csv:101226572 1 197 + 197 none 100.00 197 96.95 2e-137 40S ribosomal protein S9-2-like
blastp_kegg lcl|csv:101205193 1 197 + 197 none 100.00 197 96.95 2e-137 40S ribosomal protein S9-2-like
blastp_kegg lcl|csv:101220020 1 197 + 197 none 100.00 197 96.95 2e-137 40S ribosomal protein S9-2-like
blastp_kegg lcl|pda:103700527 1 197 + 197 none 100.00 197 92.39 3e-129 40S ribosomal protein S9-2
blastp_kegg lcl|rcu:RCOM_1514770 1 187 + 187 none 94.92 197 94.65 4e-127 40S ribosomal protein S9 putative
blastp_kegg lcl|sot:102594083 1 187 + 187 none 94.92 197 94.65 5e-127 40S ribosomal protein S9-2-like
blastp_kegg lcl|rcu:RCOM_0835620 1 187 + 187 none 95.41 196 94.65 1e-126 40S ribosomal protein S9 putative
blastp_pdb 3iz6_C 8 183 + 176 Gaps:2 91.28 195 88.20 3e-111 mol:protein length:195 40S ribosomal protein S9 (S4p)
blastp_pdb 3u5g_J 8 189 + 182 Gaps:2 91.37 197 66.11 1e-82 mol:protein length:197 40S ribosomal protein S9-A
blastp_pdb 3u5c_J 8 189 + 182 Gaps:2 91.37 197 66.11 1e-82 mol:protein length:197 40S ribosomal protein S9-A
blastp_pdb 3o30_E 8 189 + 182 Gaps:2 91.37 197 66.11 1e-82 mol:protein length:197 40S ribosomal protein S9-A
blastp_pdb 3o2z_E 8 189 + 182 Gaps:2 91.37 197 66.11 1e-82 mol:protein length:197 40S ribosomal protein S9-A
blastp_pdb 3izb_C 8 189 + 182 Gaps:2 91.37 197 66.11 1e-82 mol:protein length:197 40S ribosomal protein rpS9 (S4p)
blastp_pdb 2xzn_D 7 183 + 177 none 97.79 181 63.84 1e-79 mol:protein length:181 RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN
blastp_pdb 2xzm_D 7 183 + 177 none 97.79 181 63.84 1e-79 mol:protein length:181 RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN
blastp_pdb 1s1h_D 21 189 + 169 Gaps:2 93.30 179 67.07 1e-75 mol:protein length:179 40S ribosomal protein S9-A
blastp_pdb 3jyv_D 8 165 + 158 none 100.00 158 65.19 6e-73 mol:protein length:158 40S ribosomal protein S9(A)
blastp_uniprot_sprot sp|Q9FLF0|RS92_ARATH 1 187 + 187 none 94.92 197 90.91 6e-123 40S ribosomal protein S9-2 OS Arabidopsis thaliana GN RPS9C PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXG1|RS91_ARATH 1 187 + 187 none 94.44 198 88.24 5e-120 40S ribosomal protein S9-1 OS Arabidopsis thaliana GN RPS9B PE 1 SV 1
blastp_uniprot_sprot sp|P55935|RS9_DROME 10 180 + 171 none 87.69 195 73.68 7e-88 40S ribosomal protein S9 OS Drosophila melanogaster GN RpS9 PE 1 SV 2
blastp_uniprot_sprot sp|P29314|RS9_RAT 12 195 + 184 none 94.85 194 70.11 6e-87 40S ribosomal protein S9 OS Rattus norvegicus GN Rps9 PE 1 SV 4
blastp_uniprot_sprot sp|A9L913|RS9_PAPAN 12 195 + 184 none 94.85 194 70.11 6e-87 40S ribosomal protein S9 OS Papio anubis GN RPS9 PE 3 SV 1
blastp_uniprot_sprot sp|Q6ZWN5|RS9_MOUSE 12 195 + 184 none 94.85 194 70.11 6e-87 40S ribosomal protein S9 OS Mus musculus GN Rps9 PE 2 SV 3
blastp_uniprot_sprot sp|P46781|RS9_HUMAN 12 195 + 184 none 94.85 194 70.11 6e-87 40S ribosomal protein S9 OS Homo sapiens GN RPS9 PE 1 SV 3
blastp_uniprot_sprot sp|A6QLG5|RS9_BOVIN 12 195 + 184 none 94.85 194 70.11 6e-87 40S ribosomal protein S9 OS Bos taurus GN RPS9 PE 2 SV 1
blastp_uniprot_sprot sp|P52810|RS9_PODAS 8 197 + 190 Gaps:5 98.42 190 73.26 1e-83 40S ribosomal protein S9 OS Podospora anserina GN RPS9 PE 3 SV 1
blastp_uniprot_sprot sp|Q20228|RS9_CAEEL 12 193 + 182 Gaps:2 95.24 189 66.67 2e-83 40S ribosomal protein S9 OS Caenorhabditis elegans GN rps-9 PE 3 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 107 131 25 PS00632 none Ribosomal protein S4 signature. IPR018079
PANTHER 8 197 190 PTHR11831 none none IPR022801
ProSiteProfiles 109 180 72 PS50889 none S4 RNA-binding domain profile. IPR002942
Pfam 109 153 45 PF01479 none S4 domain IPR002942
SMART 109 180 72 SM00363 none S4 RNA-binding domain IPR002942
SUPERFAMILY 12 159 148 SSF55174 none none none
TIGRFAM 11 166 156 TIGR01018 none uS4_arch: ribosomal protein uS4 IPR005710
Pfam 7 108 102 PF00163 none Ribosomal protein S4/S9 N-terminal domain IPR001912
Gene3D 108 155 48 G3DSA:3.10.290.10 none none IPR002942

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting