Protein : Qrob_P0410140.2 Q. robur
Protein Identifier  ? Qrob_P0410140.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K03010 - DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1218  
Kegg Orthology  K03010
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0936370 1 1217 + 1217 Gaps:29 100.00 1194 96.57 0.0 DNA-directed RNA polymerase II subunit putative
blastp_kegg lcl|cam:101504170 1 1217 + 1217 Gaps:27 99.83 1194 96.48 0.0 DNA-directed RNA polymerase II subunit RPB2-like
blastp_kegg lcl|tcc:TCM_029879 1 1217 + 1217 Gaps:30 100.00 1189 97.06 0.0 DNA-directed RNA polymerase family protein isoform 1
blastp_kegg lcl|cmo:103484522 1 1217 + 1217 Gaps:34 100.00 1199 96.16 0.0 DNA-directed RNA polymerase II subunit RPB2
blastp_kegg lcl|csv:101205163 1 1217 + 1217 Gaps:34 100.00 1199 96.08 0.0 DNA-directed RNA polymerase II subunit RPB2-like
blastp_kegg lcl|gmx:100810288 1 1217 + 1217 Gaps:28 99.83 1193 96.22 0.0 DNA-directed RNA polymerase II subunit RPB2-like
blastp_kegg lcl|gmx:100790162 1 1217 + 1217 Gaps:29 99.83 1192 96.39 0.0 DNA-directed RNA polymerase II subunit RPB2-like
blastp_kegg lcl|cit:102617803 1 1217 + 1217 Gaps:29 99.92 1195 96.31 0.0 DNA-directed RNA polymerase II subunit RPB2-like
blastp_kegg lcl|cic:CICLE_v10027701mg 1 1217 + 1217 Gaps:29 99.92 1195 96.23 0.0 hypothetical protein
blastp_kegg lcl|sly:544278 1 1217 + 1217 Gaps:28 100.00 1191 95.89 0.0 rpb2 RNA polymerase II subunit 2 (EC:2.7.7.6)
blastp_pdb 3h0g_N 11 1207 + 1197 Gaps:75 100.00 1210 62.81 0.0 mol:protein length:1210 DNA-directed RNA polymerase II subunit RPB2
blastp_pdb 3h0g_B 11 1207 + 1197 Gaps:75 100.00 1210 62.81 0.0 mol:protein length:1210 DNA-directed RNA polymerase II subunit RPB2
blastp_pdb 4a93_B 7 1203 + 1197 Gaps:75 98.69 1224 61.67 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3m_B 7 1203 + 1197 Gaps:75 98.69 1224 61.67 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3l_B 7 1203 + 1197 Gaps:75 98.69 1224 61.67 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3k_B 7 1203 + 1197 Gaps:75 98.69 1224 61.67 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3j_B 7 1203 + 1197 Gaps:75 98.69 1224 61.67 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3i_B 7 1203 + 1197 Gaps:75 98.69 1224 61.67 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3g_B 7 1203 + 1197 Gaps:75 98.69 1224 61.67 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3f_B 7 1203 + 1197 Gaps:75 98.69 1224 61.67 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_uniprot_sprot sp|Q42877|RPB2_SOLLC 1 1217 + 1217 Gaps:28 100.00 1191 95.89 0.0 DNA-directed RNA polymerase II subunit RPB2 OS Solanum lycopersicum GN RPB2 PE 2 SV 1
blastp_uniprot_sprot sp|P38420|NRPB2_ARATH 6 1210 + 1205 Gaps:28 99.41 1188 94.33 0.0 DNA-directed RNA polymerase II subunit 2 OS Arabidopsis thaliana GN NRPB2 PE 1 SV 2
blastp_uniprot_sprot sp|Q54J75|RPB2_DICDI 8 1204 + 1197 Gaps:44 99.74 1170 69.75 0.0 DNA-directed RNA polymerase II subunit rpb2 OS Dictyostelium discoideum GN polr2b PE 3 SV 1
blastp_uniprot_sprot sp|P30876|RPB2_HUMAN 8 1203 + 1196 Gaps:47 99.57 1174 68.01 0.0 DNA-directed RNA polymerase II subunit RPB2 OS Homo sapiens GN POLR2B PE 1 SV 1
blastp_uniprot_sprot sp|Q8CFI7|RPB2_MOUSE 8 1203 + 1196 Gaps:47 99.57 1174 67.92 0.0 DNA-directed RNA polymerase II subunit RPB2 OS Mus musculus GN Polr2b PE 2 SV 2
blastp_uniprot_sprot sp|P08266|RPB2_DROME 20 1203 + 1184 Gaps:47 98.21 1176 67.19 0.0 DNA-directed RNA polymerase II subunit RPB2 OS Drosophila melanogaster GN RpII140 PE 2 SV 2
blastp_uniprot_sprot sp|Q02061|RPB2_SCHPO 11 1207 + 1197 Gaps:75 100.00 1210 62.81 0.0 DNA-directed RNA polymerase II subunit RPB2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpb2 PE 1 SV 2
blastp_uniprot_sprot sp|Q10578|RPB2_CAEEL 12 1215 + 1204 Gaps:53 98.32 1193 64.62 0.0 DNA-directed RNA polymerase II subunit RPB2 OS Caenorhabditis elegans GN rpb-2 PE 2 SV 2
blastp_uniprot_sprot sp|P08518|RPB2_YEAST 7 1203 + 1197 Gaps:75 98.69 1224 61.67 0.0 DNA-directed RNA polymerase II subunit RPB2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPB2 PE 1 SV 2
blastp_uniprot_sprot sp|A5DHT2|RPB2_PICGU 15 1204 + 1190 Gaps:95 98.46 1236 61.30 0.0 DNA-directed RNA polymerase II subunit RPB2 OS Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN RPB2 PE 3 SV 3

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 588 1209 622 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
PANTHER 5 561 557 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
Pfam 739 1110 372 PF00562 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 6 IPR007120
Gene3D 811 825 15 G3DSA:2.40.270.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007120
Gene3D 957 1088 132 G3DSA:2.40.270.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007120
Gene3D 209 388 180 G3DSA:3.90.1110.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007642
PANTHER 588 1209 622 PTHR20856:SF7 none none none
PANTHER 5 561 557 PTHR20856:SF7 none none none
Gene3D 31 206 176 G3DSA:3.90.1100.10 none none none
Gene3D 735 810 76 G3DSA:3.90.1100.10 none none none
Gene3D 389 547 159 G3DSA:3.90.1100.10 none none none
Pfam 208 399 192 PF04561 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 2 IPR007642
Pfam 597 658 62 PF04566 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 4 IPR007646
SUPERFAMILY 590 1207 618 SSF64484 none none none
SUPERFAMILY 20 563 544 SSF64484 none none none
Pfam 472 537 66 PF04565 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 3 IPR007645
Pfam 38 456 419 PF04563 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase beta subunit IPR007644
Pfam 683 733 51 PF04567 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 5 IPR007647
Pfam 1112 1203 92 PF04560 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 7 IPR007641
Gene3D 826 956 131 G3DSA:2.40.50.150 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR014724
ProSitePatterns 963 975 13 PS01166 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerases beta chain signature. IPR007121

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting