Protein : Qrob_P0406990.2 Q. robur
Protein Identifier  ? Qrob_P0406990.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR22792//PTHR22792:SF49 - LUPUS LA PROTEIN-RELATED // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 199  
Kegg Orthology  K18757
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0030529 ribonucleoprotein complex A macromolecular complex containing both protein and RNA molecules.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103321212 1 191 + 191 Gaps:7 35.51 552 62.24 2e-68 la-related protein 1C-like
blastp_kegg lcl|pper:PRUPE_ppa018923mg 1 191 + 191 Gaps:18 34.32 539 64.86 1e-64 hypothetical protein
blastp_kegg lcl|fve:101305142 7 192 + 186 Gaps:7 34.35 556 60.21 1e-64 uncharacterized protein LOC101305142
blastp_kegg lcl|tcc:TCM_034273 7 193 + 187 Gaps:6 34.00 550 60.43 4e-60 Winged-helix DNA-binding transcription factor family protein putative
blastp_kegg lcl|pxb:103927511 7 191 + 185 Gaps:13 33.99 559 61.58 1e-58 la-related protein 1C-like
blastp_kegg lcl|cit:102616770 7 172 + 166 Gaps:6 31.44 547 59.30 2e-57 protein enabled homolog
blastp_kegg lcl|mdm:103423449 7 191 + 185 Gaps:13 33.99 559 61.05 2e-57 la-related protein 1C-like
blastp_kegg lcl|vvi:100243746 7 188 + 182 Gaps:3 32.74 565 55.14 2e-54 uncharacterized LOC100243746
blastp_kegg lcl|rcu:RCOM_1598960 7 195 + 189 Gaps:8 42.09 449 54.50 4e-54 lupus la ribonucleoprotein putative
blastp_kegg lcl|gmx:100775279 7 186 + 180 Gaps:11 33.65 520 57.14 4e-47 la-related protein-like
blastp_pdb 1s7a_A 43 110 + 68 Gaps:3 68.93 103 38.03 2e-11 mol:protein length:103 Lupus La protein
blastp_pdb 2cqk_A 34 108 + 75 Gaps:2 76.24 101 45.45 3e-11 mol:protein length:101 C-Mpl binding protein
blastp_pdb 1yty_B 43 110 + 68 Gaps:3 36.60 194 38.03 1e-10 mol:protein length:194 Lupus La protein
blastp_pdb 1yty_A 43 110 + 68 Gaps:3 36.60 194 38.03 1e-10 mol:protein length:194 Lupus La protein
blastp_pdb 1zh5_B 43 110 + 68 Gaps:3 36.41 195 38.03 1e-10 mol:protein length:195 Lupus La protein
blastp_pdb 1zh5_A 43 110 + 68 Gaps:3 36.41 195 38.03 1e-10 mol:protein length:195 Lupus La protein
blastp_pdb 2vop_A 43 110 + 68 Gaps:3 36.79 193 38.03 1e-10 mol:protein length:193 LUPUS LA PROTEIN
blastp_pdb 2voo_B 43 110 + 68 Gaps:3 36.79 193 38.03 1e-10 mol:protein length:193 LUPUS LA PROTEIN
blastp_pdb 2voo_A 43 110 + 68 Gaps:3 36.79 193 38.03 1e-10 mol:protein length:193 LUPUS LA PROTEIN
blastp_pdb 2von_B 43 110 + 68 Gaps:3 36.79 193 38.03 1e-10 mol:protein length:193 LUPUS LA PROTEIN
blastp_uniprot_sprot sp|Q659C4|LAR1B_HUMAN 31 116 + 86 Gaps:1 9.52 914 52.87 8e-21 La-related protein 1B OS Homo sapiens GN LARP1B PE 1 SV 2
blastp_uniprot_sprot sp|Q6PKG0|LARP1_HUMAN 28 116 + 89 none 8.12 1096 50.56 8e-20 La-related protein 1 OS Homo sapiens GN LARP1 PE 1 SV 2
blastp_uniprot_sprot sp|Q6ZQ58|LARP1_MOUSE 39 116 + 78 none 7.28 1072 51.28 5e-19 La-related protein 1 OS Mus musculus GN Larp1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9P6K0|YLA3_SCHPO 38 123 + 86 Gaps:8 19.79 475 42.55 1e-17 Uncharacterized HTH La-type RNA-binding protein C1527.03 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC1527.03 PE 1 SV 1
blastp_uniprot_sprot sp|Q9VAW5|LARP_DROME 42 116 + 75 Gaps:1 4.54 1673 43.42 3e-12 La-related protein OS Drosophila melanogaster GN larp PE 1 SV 5
blastp_uniprot_sprot sp|Q05CL8|LARP7_MOUSE 40 111 + 72 Gaps:4 13.33 570 42.11 5e-12 La-related protein 7 OS Mus musculus GN Larp7 PE 1 SV 2
blastp_uniprot_sprot sp|Q4G0J3|LARP7_HUMAN 40 110 + 71 Gaps:4 12.89 582 44.00 5e-12 La-related protein 7 OS Homo sapiens GN LARP7 PE 1 SV 1
blastp_uniprot_sprot sp|Q4R627|LARP7_MACFA 40 110 + 71 Gaps:4 12.91 581 44.00 5e-12 La-related protein 7 OS Macaca fascicularis GN LARP7 PE 2 SV 1
blastp_uniprot_sprot sp|Q5XI01|LARP7_RAT 40 111 + 72 Gaps:4 13.31 571 42.11 7e-12 La-related protein 7 OS Rattus norvegicus GN Larp7 PE 1 SV 2
blastp_uniprot_sprot sp|Q9I7T7|Y1505_DROME 36 116 + 81 none 5.29 1531 41.98 9e-12 La-related protein CG11505 OS Drosophila melanogaster GN CG11505 PE 1 SV 2

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 34 110 77 SM00715 none Domain in the RNA-binding Lupus La protein IPR006630
SUPERFAMILY 27 119 93 SSF46785 none none none
PANTHER 27 116 90 PTHR22792 none none none
ProSiteProfiles 30 119 90 PS50961 none La-type HTH domain profile. IPR006630
Pfam 41 97 57 PF05383 none La domain IPR006630
Gene3D 40 113 74 G3DSA:1.10.10.10 none none IPR011991
PANTHER 27 116 90 PTHR22792:SF49 none none none
PRINTS 98 111 14 PR00302 none Lupus La protein signature IPR002344
PRINTS 43 60 18 PR00302 none Lupus La protein signature IPR002344

0 Localization

0 Qtllist

0 Targeting