Protein : Qrob_P0404680.2 Q. robur
Protein Identifier  ? Qrob_P0404680.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K14293 - importin subunit beta-1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 872  
Kegg Orthology  K14293
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0008536 Ran GTPase binding Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0736490 1 871 + 871 none 100.00 871 92.19 0.0 importin beta-1 putative
blastp_kegg lcl|vvi:100265913 1 871 + 871 none 100.00 871 91.50 0.0 importin subunit beta-1-like
blastp_kegg lcl|pop:POPTR_0015s01270g 1 871 + 871 none 100.00 871 91.39 0.0 POPTRDRAFT_732844 hypothetical protein
blastp_kegg lcl|pop:POPTR_0012s02460g 1 871 + 871 none 100.00 871 90.59 0.0 POPTRDRAFT_569577 importin beta-2 family protein
blastp_kegg lcl|rcu:RCOM_0953140 1 871 + 871 none 97.10 897 90.24 0.0 importin beta-1 putative
blastp_kegg lcl|sot:102595228 1 871 + 871 none 100.00 871 89.78 0.0 importin subunit beta-1-like
blastp_kegg lcl|sly:101263498 1 871 + 871 none 100.00 871 89.78 0.0 importin subunit beta-1-like
blastp_kegg lcl|csv:101203580 1 871 + 871 none 100.00 871 88.75 0.0 importin subunit beta-1-like
blastp_kegg lcl|tcc:TCM_015443 2 871 + 870 Gaps:1 97.42 892 88.95 0.0 ARM repeat superfamily protein
blastp_kegg lcl|tcc:TCM_015442 3 871 + 869 Gaps:1 100.00 868 89.17 0.0 ARM repeat superfamily protein
blastp_pdb 1ukl_B 3 861 + 859 Gaps:44 98.74 876 40.69 0.0 mol:protein length:876 Importin beta-1 subunit
blastp_pdb 1ukl_A 3 861 + 859 Gaps:44 98.74 876 40.69 0.0 mol:protein length:876 Importin beta-1 subunit
blastp_pdb 3lww_C 3 861 + 859 Gaps:44 98.74 876 40.46 0.0 mol:protein length:876 Importin subunit beta-1
blastp_pdb 3lww_A 3 861 + 859 Gaps:44 98.74 876 40.46 0.0 mol:protein length:876 Importin subunit beta-1
blastp_pdb 2q5d_B 3 861 + 859 Gaps:44 98.74 876 40.46 0.0 mol:protein length:876 Importin beta-1 subunit
blastp_pdb 2q5d_A 3 861 + 859 Gaps:44 98.74 876 40.46 0.0 mol:protein length:876 Importin beta-1 subunit
blastp_pdb 2p8q_A 3 861 + 859 Gaps:44 98.74 876 40.46 0.0 mol:protein length:876 Importin beta-1 subunit
blastp_pdb 1qgr_A 3 861 + 859 Gaps:44 98.74 876 40.35 0.0 mol:protein length:876 PROTEIN (IMPORTIN BETA SUBUNIT)
blastp_pdb 1qgk_A 3 861 + 859 Gaps:44 98.74 876 40.35 0.0 mol:protein length:876 PROTEIN (IMPORTIN BETA SUBUNIT)
blastp_pdb 2qna_A 130 861 + 732 Gaps:43 96.98 762 41.27 4e-172 mol:protein length:762 Importin subunit beta-1
blastp_uniprot_sprot sp|P70168|IMB1_MOUSE 3 861 + 859 Gaps:44 98.74 876 40.69 0.0 Importin subunit beta-1 OS Mus musculus GN Kpnb1 PE 1 SV 2
blastp_uniprot_sprot sp|O13864|IMB1_SCHPO 3 867 + 865 Gaps:36 99.54 863 40.98 0.0 Importin subunit beta-1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN kap95 PE 3 SV 1
blastp_uniprot_sprot sp|Q14974|IMB1_HUMAN 3 861 + 859 Gaps:44 98.74 876 40.46 0.0 Importin subunit beta-1 OS Homo sapiens GN KPNB1 PE 1 SV 2
blastp_uniprot_sprot sp|P52296|IMB1_RAT 3 861 + 859 Gaps:45 98.74 875 40.28 0.0 Importin subunit beta-1 OS Rattus norvegicus GN Kpnb1 PE 1 SV 1
blastp_uniprot_sprot sp|O18388|IMB_DROME 1 867 + 867 Gaps:43 98.64 884 37.73 8e-178 Importin subunit beta OS Drosophila melanogaster GN Fs(2)Ket PE 2 SV 2
blastp_uniprot_sprot sp|Q06142|IMB1_YEAST 4 871 + 868 Gaps:51 99.54 861 34.19 2e-122 Importin subunit beta-1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN KAP95 PE 1 SV 1
blastp_uniprot_sprot sp|Q8H0U4|TNPO1_ARATH 49 592 + 544 Gaps:103 60.27 891 25.14 1e-27 Transportin-1 OS Arabidopsis thaliana GN TRN1 PE 1 SV 1
blastp_uniprot_sprot sp|B9FDR3|TNPO1_ORYSJ 48 610 + 563 Gaps:120 61.84 891 23.96 3e-19 Transportin-1 OS Oryza sativa subsp. japonica GN TRN1 PE 3 SV 2
blastp_uniprot_sprot sp|B8ARW2|TNPO1_ORYSI 48 610 + 563 Gaps:120 61.91 890 24.14 4e-19 Transportin-1 OS Oryza sativa subsp. indica GN OsI_18044 PE 2 SV 1
blastp_uniprot_sprot sp|Q8BFY9|TNPO1_MOUSE 12 509 + 498 Gaps:108 56.35 898 23.32 7e-15 Transportin-1 OS Mus musculus GN Tnpo1 PE 1 SV 2

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 3 861 859 SSF48371 none none IPR016024
Pfam 381 437 57 PF13513 none HEAT-like repeat none
ProSiteProfiles 23 103 81 PS50166 none Importin-beta N-terminal domain profile. IPR001494
PANTHER 1 869 869 PTHR10527 none none none
PANTHER 1 869 869 PTHR10527:SF19 none none none
Pfam 23 102 80 PF03810 none Importin-beta N-terminal domain IPR001494
SMART 23 103 81 SM00913 none Importin-beta N-terminal domain IPR001494
Gene3D 129 861 733 G3DSA:1.25.10.10 none none IPR011989

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting