Protein : Qrob_P0403200.2 Q. robur
Protein Identifier  ? Qrob_P0403200.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K15028 - translation initiation factor 3 subunit K Gene Prediction Quality  validated
Protein length 

Sequence

Length: 236  
Kegg Orthology  K15028
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0005852 eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.
GO:0043022 ribosome binding Interacting selectively and non-covalently with any part of a ribosome.
GO:0006446 regulation of translational initiation Any process that modulates the frequency, rate or extent of translational initiation.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0006s13880g 1 235 + 235 none 100.00 235 90.21 2e-155 Eukaryotic translation initiation factor 3 subunit 11 family protein
blastp_kegg lcl|tcc:TCM_037462 1 235 + 235 none 100.00 235 91.49 1e-153 Eukaryotic translation initiation factor 3 subunit K isoform 1
blastp_kegg lcl|rcu:RCOM_0708930 1 235 + 235 Gaps:1 100.00 236 88.56 3e-149 Eukaryotic translation initiation factor 3 subunit putative
blastp_kegg lcl|fve:101306954 16 235 + 220 none 94.83 232 90.91 3e-147 eukaryotic translation initiation factor 3 subunit K-like
blastp_kegg lcl|vvi:100259495 8 235 + 228 Gaps:2 98.69 229 90.71 4e-147 eukaryotic translation initiation factor 3 subunit K-like
blastp_kegg lcl|pxb:103959102 1 235 + 235 Gaps:2 100.00 233 89.27 3e-146 eukaryotic translation initiation factor 3 subunit K-like
blastp_kegg lcl|cmo:103492400 1 235 + 235 Gaps:4 100.00 231 87.88 4e-146 eukaryotic translation initiation factor 3 subunit K
blastp_kegg lcl|csv:101214255 1 235 + 235 Gaps:4 100.00 231 87.45 1e-145 eukaryotic translation initiation factor 3 subunit K-like
blastp_kegg lcl|mdm:103454020 1 235 + 235 Gaps:2 100.00 233 88.84 1e-145 eukaryotic translation initiation factor 3 subunit K-like
blastp_kegg lcl|pop:POPTR_0018s07370g 16 235 + 220 none 92.44 238 90.00 3e-145 POPTRDRAFT_1105492 Eukaryotic translation initiation factor 3 subunit 11 family protein
blastp_pdb 1rz4_A 23 232 + 210 Gaps:9 88.94 226 35.32 3e-35 mol:protein length:226 Eukaryotic translation initiation factor 3 su
blastp_uniprot_sprot sp|Q94HF1|EIF3K_ORYSJ 12 235 + 224 Gaps:1 98.67 226 79.82 5e-133 Eukaryotic translation initiation factor 3 subunit K OS Oryza sativa subsp. japonica GN TIF3K1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SZA3|EIF3K_ARATH 1 235 + 235 Gaps:9 100.00 226 80.53 7e-129 Eukaryotic translation initiation factor 3 subunit K OS Arabidopsis thaliana GN TIF3K1 PE 2 SV 1
blastp_uniprot_sprot sp|Q3T0V3|EIF3K_BOVIN 23 232 + 210 Gaps:9 92.20 218 35.32 4e-35 Eukaryotic translation initiation factor 3 subunit K OS Bos taurus GN EIF3K PE 2 SV 1
blastp_uniprot_sprot sp|Q9DBZ5|EIF3K_MOUSE 23 232 + 210 Gaps:9 92.20 218 35.32 6e-35 Eukaryotic translation initiation factor 3 subunit K OS Mus musculus GN Eif3k PE 1 SV 1
blastp_uniprot_sprot sp|Q9UBQ5|EIF3K_HUMAN 23 232 + 210 Gaps:9 92.20 218 35.32 7e-35 Eukaryotic translation initiation factor 3 subunit K OS Homo sapiens GN EIF3K PE 1 SV 1
blastp_uniprot_sprot sp|Q567V6|EIF3K_DANRE 23 232 + 210 Gaps:9 91.78 219 33.83 5e-33 Eukaryotic translation initiation factor 3 subunit K OS Danio rerio GN eif3k PE 2 SV 1
blastp_uniprot_sprot sp|Q9W2D9|EIF3K_DROME 5 232 + 228 Gaps:18 97.30 222 35.65 5e-33 Eukaryotic translation initiation factor 3 subunit K OS Drosophila melanogaster GN CG10306 PE 2 SV 1
blastp_uniprot_sprot sp|B4I7U3|EIF3K_DROSE 5 232 + 228 Gaps:18 97.30 222 35.65 6e-33 Eukaryotic translation initiation factor 3 subunit K OS Drosophila sechellia GN GM15855 PE 3 SV 1
blastp_uniprot_sprot sp|B3NN00|EIF3K_DROER 5 232 + 228 Gaps:18 97.30 222 35.65 8e-33 Eukaryotic translation initiation factor 3 subunit K OS Drosophila erecta GN GG22131 PE 3 SV 1
blastp_uniprot_sprot sp|Q28C65|EIF3K_XENTR 23 230 + 208 Gaps:9 91.28 218 34.67 3e-32 Eukaryotic translation initiation factor 3 subunit K OS Xenopus tropicalis GN eif3k PE 2 SV 1
rpsblast_cdd gnl|CDD|202616 27 168 + 142 Gaps:10 98.06 155 22.37 7e-19 pfam03399 SAC3_GANP SAC3/GANP/Nin1/mts3/eIF-3 p25 family. This large family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 and mammalian GANP/MCM3-associated proteins which facilitate the nuclear localisation of MCM3 a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits stabilisation of ternary complex binding to 40 S subunits and dissociation of 40 and 60 S subunits.
rpsblast_cdd gnl|CDD|204392 71 218 + 148 Gaps:15 97.92 144 26.95 1e-12 pfam10075 PCI_Csn8 COP9 signalosome subunit CSN8. This PCI_Csn8 domain is conserved from plants to humans. It is a signature protein motif found in components of CSN (COP9 signalosome). It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development.
rpsblast_kog gnl|CDD|38462 6 235 + 230 Gaps:15 100.00 217 46.54 8e-70 KOG3252 KOG3252 KOG3252 Uncharacterized conserved protein [Function unknown].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 140 232 93 SSF46785 none none none
PANTHER 1 232 232 PTHR13022 none none IPR009374
Gene3D 132 233 102 G3DSA:1.10.10.10 none none IPR011991
Gene3D 15 128 114 G3DSA:1.25.40.250 none none IPR016020
Pfam 5 171 167 PF03399 none SAC3/GANP/Nin1/mts3/eIF-3 p25 family IPR005062
SUPERFAMILY 13 137 125 SSF48371 none none IPR016024

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting