Protein : Qrob_P0402900.2 Q. robur
Protein Identifier  ? Qrob_P0402900.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR10504 - BACTERICIDAL PERMEABILITY-INCREASING (BPI) PROTEIN-RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 488  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008289 lipid binding Interacting selectively and non-covalently with a lipid.
GO:0005615 extracellular space That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa004478mg 1 477 + 477 Gaps:8 92.72 508 65.18 0.0 hypothetical protein
blastp_kegg lcl|pmum:103326556 1 477 + 477 Gaps:8 95.15 495 65.18 0.0 putative BPI/LBP family protein At1g04970
blastp_kegg lcl|tcc:TCM_030785 5 482 + 478 Gaps:5 95.42 502 61.59 0.0 Lipid-binding serum glycoprotein family protein putative
blastp_kegg lcl|pop:POPTR_0001s36930g 1 468 + 468 Gaps:4 99.57 470 61.54 0.0 POPTRDRAFT_838516 hypothetical protein
blastp_kegg lcl|fve:101292196 1 481 + 481 Gaps:7 98.54 481 62.03 0.0 putative BPI/LBP family protein At1g04970-like
blastp_kegg lcl|vvi:100265388 1 477 + 477 Gaps:2 95.78 498 58.28 0.0 putative BPI/LBP family protein At3g20270-like
blastp_kegg lcl|cic:CICLE_v10014979mg 18 477 + 460 Gaps:3 92.23 502 59.40 0.0 hypothetical protein
blastp_kegg lcl|cit:102628883 18 477 + 460 Gaps:3 92.23 502 59.40 0.0 putative BPI/LBP family protein At1g04970-like
blastp_kegg lcl|tcc:TCM_002264 6 482 + 477 Gaps:6 96.79 499 55.69 0.0 Lipid-binding serum glycoprotein family protein isoform 1
blastp_kegg lcl|pop:POPTR_0014s15890g 18 477 + 460 none 93.50 492 57.83 0.0 POPTRDRAFT_573035 lipid-binding serum glycoprotein
blastp_pdb 1bp1_A 31 451 + 421 Gaps:35 92.54 456 25.36 4e-29 mol:protein length:456 BACTERICIDAL/PERMEABILITY-INCREASING PROTEIN
blastp_pdb 1ewf_A 31 451 + 421 Gaps:35 92.54 456 25.12 1e-28 mol:protein length:456 BACTERICIDAL/PERMEABILITY-INCREASING PROTEIN
blastp_uniprot_sprot sp|Q9MAU5|Y1049_ARATH 20 477 + 458 Gaps:1 93.65 488 54.70 0.0 Putative BPI/LBP family protein At1g04970 OS Arabidopsis thaliana GN At1g04970 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VYC2|Y2070_ARATH 1 479 + 479 Gaps:7 92.04 515 47.89 4e-147 Putative BPI/LBP family protein At3g20270 OS Arabidopsis thaliana GN At3g20270 PE 2 SV 1
blastp_uniprot_sprot sp|P17213|BPI_HUMAN 31 451 + 421 Gaps:35 86.65 487 25.12 1e-27 Bactericidal permeability-increasing protein OS Homo sapiens GN BPI PE 1 SV 4
blastp_uniprot_sprot sp|Q6AXU0|BPI_RAT 23 479 + 457 Gaps:53 94.61 482 23.68 8e-27 Bactericidal permeability-increasing protein OS Rattus norvegicus GN Bpi PE 2 SV 1
blastp_uniprot_sprot sp|Q2TBI0|LBP_BOVIN 31 460 + 430 Gaps:29 89.19 481 24.48 5e-26 Lipopolysaccharide-binding protein OS Bos taurus GN LBP PE 2 SV 1
blastp_uniprot_sprot sp|P18428|LBP_HUMAN 33 460 + 428 Gaps:35 88.77 481 23.65 3e-23 Lipopolysaccharide-binding protein OS Homo sapiens GN LBP PE 1 SV 3
blastp_uniprot_sprot sp|Q28739|BPI_RABIT 35 460 + 426 Gaps:24 95.73 445 22.30 6e-22 Bactericidal permeability-increasing protein (Fragment) OS Oryctolagus cuniculus GN BPI PE 2 SV 1
blastp_uniprot_sprot sp|Q67E05|BPI_MOUSE 23 452 + 430 Gaps:50 89.03 483 23.95 4e-19 Bactericidal permeability-increasing protein OS Mus musculus GN Bpi PE 2 SV 1
blastp_uniprot_sprot sp|Q61805|LBP_MOUSE 33 460 + 428 Gaps:39 88.77 481 23.89 3e-18 Lipopolysaccharide-binding protein OS Mus musculus GN Lbp PE 1 SV 2
blastp_uniprot_sprot sp|Q8C186|BPIFC_MOUSE 29 477 + 449 Gaps:49 88.41 509 23.33 3e-17 BPI fold-containing family C protein OS Mus musculus GN Bpifc PE 2 SV 1
rpsblast_cdd gnl|CDD|29338 281 477 + 197 Gaps:3 100.00 200 35.50 2e-38 cd00026 BPI2 BPI/LBP/CETP C-terminal domain Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria. Apolar pockets on the concave surface bind a molecule of phosphatidylcholine primarily by interacting with their acyl chains this suggests that the pockets may also bind the acyl chains of lipopolysaccharide..
rpsblast_cdd gnl|CDD|29337 28 254 + 227 Gaps:8 100.00 223 28.70 1e-33 cd00025 BPI1 BPI/LBP/CETP N-terminal domain Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria. Apolar pockets on the concave surface bind a molecule of phosphatidylcholine primarily by interacting with their acyl chains this suggests that the pockets may also bind the acyl chains of lipopolysaccharide..
rpsblast_cdd gnl|CDD|128624 280 464 + 185 Gaps:9 94.06 202 27.37 3e-19 smart00329 BPI2 BPI/LBP/CETP C-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain.
rpsblast_cdd gnl|CDD|201703 37 205 + 169 Gaps:13 96.93 163 24.05 4e-19 pfam01273 LBP_BPI_CETP LBP / BPI / CETP family N-terminal domain. The N and C terminal domains of the LBP/BPI/CETP family are structurally similar.
rpsblast_cdd gnl|CDD|202449 280 460 + 181 Gaps:11 78.15 238 25.81 4e-17 pfam02886 LBP_BPI_CETP_C LBP / BPI / CETP family C-terminal domain. The N and C terminal domains of the LBP/BPI/CETP family are structurally similar.
rpsblast_cdd gnl|CDD|29339 29 476 + 448 Gaps:40 100.00 208 43.75 1e-15 cd00264 BPI BPI/LBP/CETP domain Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria. Apolar pockets on the concave surface bind a molecule of phosphatidylcholine primarily by interacting with their acyl chains this suggests that the pockets may also bind the acyl chains of lipopolysaccharide..
rpsblast_cdd gnl|CDD|197657 33 253 + 221 Gaps:10 97.33 225 20.09 6e-10 smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain.
rpsblast_kog gnl|CDD|39362 2 476 + 475 Gaps:29 96.75 492 27.94 3e-65 KOG4160 KOG4160 KOG4160 BPI/LBP/CETP family protein [Defense mechanisms].

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 213 477 265 G3DSA:3.15.20.10 none none none
Gene3D 36 212 177 G3DSA:3.15.10.10 none none none
SMART 276 474 199 SM00329 none BPI/LBP/CETP C-terminal domain IPR001124
SUPERFAMILY 30 242 213 SSF55394 none none IPR017943
Pfam 277 468 192 PF02886 none LBP / BPI / CETP family, C-terminal domain IPR001124
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 4 14 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 1 477 477 PTHR10504 none none none
Phobius 15 19 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 20 487 468 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 244 476 233 SSF55394 none none IPR017943
SMART 33 258 226 SM00328 none BPI/LBP/CETP N-terminal domain IPR017942
PANTHER 1 477 477 PTHR10504:SF73 none none none
Phobius 1 19 19 SIGNAL_PEPTIDE none Signal peptide region none
PIRSF 5 481 477 PIRSF002417 none none IPR030675
Pfam 37 207 171 PF01273 none LBP / BPI / CETP family, N-terminal domain IPR017942

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 21 20
SignalP_EUK 1 19 18
SignalP_GRAM_NEGATIVE 1 21 20

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting