Protein : Qrob_P0399360.2 Q. robur
Protein Identifier  ? Qrob_P0399360.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=8) K13449 - pathogenesis-related protein 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 184  
Kegg Orthology  K13449
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005576 extracellular region The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_006332 11 170 + 160 Gaps:6 100.00 156 80.13 4e-87 Pathogenesis-related protein 1
blastp_kegg lcl|pop:POPTR_0001s29560g 11 170 + 160 Gaps:1 96.41 167 73.29 9e-84 POPTRDRAFT_175615 Pathogenesis-related family protein
blastp_kegg lcl|vvi:100246419 11 170 + 160 none 100.00 160 72.50 5e-82 PR-1 pathogenesis-related protein 1
blastp_kegg lcl|pvu:PHAVU_006G196900g 11 170 + 160 Gaps:4 89.62 183 73.17 2e-81 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s29530g 11 170 + 160 Gaps:1 100.00 161 73.29 5e-80 Pathogenesis-related family protein
blastp_kegg lcl|vvi:100258414 11 170 + 160 none 100.00 160 70.62 5e-80 PR1 pathogenesis-related protein
blastp_kegg lcl|cic:CICLE_v10029950mg 13 170 + 158 Gaps:1 100.00 159 70.44 1e-78 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10030029mg 13 170 + 158 Gaps:1 100.00 159 69.81 4e-78 hypothetical protein
blastp_kegg lcl|vvi:100247990 11 170 + 160 Gaps:1 100.00 161 70.81 6e-78 basic form of pathogenesis-related protein 1-like
blastp_kegg lcl|cit:102630276 13 170 + 158 Gaps:1 100.00 159 68.55 1e-76 pathogenesis-related leaf protein 6-like
blastp_pdb 1cfe_A 35 170 + 136 Gaps:3 100.00 135 65.93 4e-58 mol:protein length:135 PATHOGENESIS-RELATED PROTEIN P14A
blastp_pdb 1smb_A 40 167 + 128 Gaps:5 85.06 154 32.06 6e-16 mol:protein length:154 17kD fetal brain protein
blastp_pdb 3q2u_A 39 172 + 134 Gaps:26 75.12 205 33.77 1e-11 mol:protein length:205 Glioma pathogenesis-related protein 1
blastp_pdb 3q2r_A 39 172 + 134 Gaps:26 75.12 205 33.77 1e-11 mol:protein length:205 Glioma pathogenesis-related protein 1
blastp_pdb 2dda_D 32 163 + 132 Gaps:18 67.30 211 28.17 8e-08 mol:protein length:211 Pseudechetoxin
blastp_pdb 2dda_C 32 163 + 132 Gaps:18 67.30 211 28.17 8e-08 mol:protein length:211 Pseudechetoxin
blastp_pdb 2dda_B 32 163 + 132 Gaps:18 67.30 211 28.17 8e-08 mol:protein length:211 Pseudechetoxin
blastp_pdb 2dda_A 32 163 + 132 Gaps:18 67.30 211 28.17 8e-08 mol:protein length:211 Pseudechetoxin
blastp_pdb 2epf_D 35 163 + 129 Gaps:18 66.19 210 28.06 1e-07 mol:protein length:210 Pseudecin
blastp_pdb 2epf_C 35 163 + 129 Gaps:18 66.19 210 28.06 1e-07 mol:protein length:210 Pseudecin
blastp_uniprot_sprot sp|P33154|PR1_ARATH 10 170 + 161 Gaps:1 99.38 161 66.88 2e-73 Pathogenesis-related protein 1 OS Arabidopsis thaliana GN At2g14610 PE 1 SV 1
blastp_uniprot_sprot sp|P11670|PRB1_TOBAC 13 170 + 158 Gaps:1 89.83 177 61.64 8e-66 Basic form of pathogenesis-related protein 1 OS Nicotiana tabacum PE 3 SV 1
blastp_uniprot_sprot sp|P04284|PR06_SOLLC 11 170 + 160 Gaps:3 100.00 159 62.26 6e-65 Pathogenesis-related leaf protein 6 OS Solanum lycopersicum GN PR1B1 PE 1 SV 2
blastp_uniprot_sprot sp|Q04108|PR04_SOLLC 11 170 + 160 Gaps:3 100.00 159 61.64 2e-63 Pathogenesis-related leaf protein 4 OS Solanum lycopersicum PE 2 SV 1
blastp_uniprot_sprot sp|P07053|PR1B_TOBAC 2 170 + 169 Gaps:7 98.81 168 57.23 4e-61 Pathogenesis-related protein 1B OS Nicotiana tabacum PE 2 SV 1
blastp_uniprot_sprot sp|P09042|PR1C_TOBAC 17 170 + 154 Gaps:6 90.48 168 60.53 6e-60 Pathogenesis-related protein 1C OS Nicotiana tabacum PE 2 SV 3
blastp_uniprot_sprot sp|P08299|PR1A_TOBAC 30 170 + 141 Gaps:2 85.12 168 61.54 9e-58 Pathogenesis-related protein 1A OS Nicotiana tabacum PE 1 SV 1
blastp_uniprot_sprot sp|Q41359|PR1_SAMNI 29 170 + 142 Gaps:3 86.83 167 61.38 4e-57 Pathogenesis-related protein PR-1 type OS Sambucus nigra PE 2 SV 1
blastp_uniprot_sprot sp|Q08697|PR1A_SOLLC 15 166 + 152 Gaps:1 87.43 175 55.56 1e-55 Pathogenesis-related protein 1A1 OS Solanum lycopersicum PE 2 SV 1
blastp_uniprot_sprot sp|Q05968|PR1_HORVU 29 170 + 142 Gaps:4 89.02 164 55.48 9e-51 Pathogenesis-related protein 1 OS Hordeum vulgare PE 2 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 127 137 11 PS01009 none CRISP family signature 1. IPR018244
Phobius 35 183 149 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 42 158 117 PF00188 none Cysteine-rich secretory protein family IPR014044
Phobius 1 34 34 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 18 29 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 11 180 170 PTHR10334 none none IPR001283
ProSitePatterns 153 164 12 PS01010 none CRISP family signature 2. IPR018244
SMART 36 166 131 SM00198 none SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. IPR014044
Phobius 1 17 17 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 30 34 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PRINTS 153 166 14 PR00837 none Allergen V5/Tpx-1 family signature IPR001283
PRINTS 126 142 17 PR00837 none Allergen V5/Tpx-1 family signature IPR001283
PRINTS 57 75 19 PR00837 none Allergen V5/Tpx-1 family signature IPR001283
PRINTS 103 116 14 PR00837 none Allergen V5/Tpx-1 family signature IPR001283
Gene3D 30 170 141 G3DSA:3.40.33.10 none none IPR014044
PANTHER 11 180 170 PTHR10334:SF170 none none none
SUPERFAMILY 18 170 153 SSF55797 none none IPR014044

4 Localization

Analysis Start End Length
TMHMM 12 34 22
SignalP_GRAM_POSITIVE 1 36 35
SignalP_EUK 1 34 33
SignalP_GRAM_NEGATIVE 1 34 33

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting