Protein : Qrob_P0398830.2 Q. robur
Protein Identifier  ? Qrob_P0398830.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR12052:SF4 - THIOREDOXIN-LIKE PROTEN 4A, 4B Gene Prediction Quality  validated
Protein length 

Sequence

Length: 105  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005681 spliceosomal complex Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
GO:0007067 mitotic nuclear division A cell cycle process comprising the steps by which the nucleus of a eukaryotic cell divides; the process involves condensation of chromosomal DNA into a highly compacted form. Canonically, mitosis produces two daughter nuclei whose chromosome complement is identical to that of the mother cell.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s29450g 7 97 + 91 none 68.94 132 79.12 9e-47 POPTRDRAFT_707485 hypothetical protein
blastp_kegg lcl|cam:101507807 3 97 + 95 none 62.91 151 81.05 9e-47 thioredoxin-like protein 4B-like
blastp_kegg lcl|pda:103717531 1 97 + 97 none 63.82 152 75.26 2e-46 thioredoxin-like protein 4B
blastp_kegg lcl|mdm:103439187 3 97 + 95 none 62.91 151 80.00 2e-46 thioredoxin-like protein 4B
blastp_kegg lcl|csv:101210997 3 97 + 95 none 62.91 151 80.00 4e-46 thioredoxin-like protein 4B-like
blastp_kegg lcl|cic:CICLE_v10022683mg 3 97 + 95 none 62.91 151 77.89 5e-46 hypothetical protein
blastp_kegg lcl|pmum:103331273 3 97 + 95 none 62.91 151 78.95 5e-46 thioredoxin-like protein 4B
blastp_kegg lcl|tcc:TCM_031877 3 97 + 95 none 62.91 151 77.89 6e-46 MRNA splicing factor thioredoxin-like U5 snRNP
blastp_kegg lcl|cit:102626806 3 97 + 95 none 62.91 151 77.89 7e-46 thioredoxin-like protein 4B-like
blastp_kegg lcl|pper:PRUPE_ppa012017mg 3 97 + 95 none 50.80 187 78.95 1e-45 hypothetical protein
blastp_pdb 3gix_B 2 102 + 101 Gaps:4 65.10 149 59.79 7e-33 mol:protein length:149 Thioredoxin-like protein 4B
blastp_pdb 3gix_A 2 102 + 101 Gaps:4 65.10 149 59.79 7e-33 mol:protein length:149 Thioredoxin-like protein 4B
blastp_pdb 1xbs_A 6 102 + 97 Gaps:4 62.42 149 61.29 7e-33 mol:protein length:149 Dim1-like protein
blastp_pdb 1syx_E 3 96 + 94 Gaps:4 64.79 142 40.22 5e-12 mol:protein length:142 Spliceosomal U5 snRNP-specific 15 kDa protein
blastp_pdb 1syx_C 3 96 + 94 Gaps:4 64.79 142 40.22 5e-12 mol:protein length:142 Spliceosomal U5 snRNP-specific 15 kDa protein
blastp_pdb 1syx_A 3 96 + 94 Gaps:4 64.79 142 40.22 5e-12 mol:protein length:142 Spliceosomal U5 snRNP-specific 15 kDa protein
blastp_pdb 1qgv_A 3 96 + 94 Gaps:4 64.79 142 40.22 5e-12 mol:protein length:142 SPLICEOSOMAL PROTEIN U5-15KD
blastp_pdb 1pqn_A 3 96 + 94 Gaps:4 72.44 127 40.22 5e-12 mol:protein length:127 Spliceosomal U5 snRNP-specific 15 kDa protein
blastp_pdb 2av4_A 2 96 + 95 Gaps:2 58.13 160 32.26 3e-09 mol:protein length:160 Thioredoxin-like protein 4A (DIM1)
blastp_uniprot_sprot sp|Q9NX01|TXN4B_HUMAN 6 102 + 97 Gaps:4 62.42 149 61.29 3e-32 Thioredoxin-like protein 4B OS Homo sapiens GN TXNL4B PE 1 SV 1
blastp_uniprot_sprot sp|Q8BUH1|TXN4B_MOUSE 6 102 + 97 Gaps:4 62.42 149 61.29 1e-31 Thioredoxin-like protein 4B OS Mus musculus GN Txnl4b PE 2 SV 2
blastp_uniprot_sprot sp|P83877|TXN4A_MOUSE 3 96 + 94 Gaps:4 64.79 142 40.22 2e-11 Thioredoxin-like protein 4A OS Mus musculus GN Txnl4a PE 2 SV 1
blastp_uniprot_sprot sp|P83876|TXN4A_HUMAN 3 96 + 94 Gaps:4 64.79 142 40.22 2e-11 Thioredoxin-like protein 4A OS Homo sapiens GN TXNL4A PE 1 SV 1
blastp_uniprot_sprot sp|Q9FE62|YLS8_ARATH 3 96 + 94 Gaps:4 64.79 142 36.96 5e-09 Thioredoxin-like protein YLS8 OS Arabidopsis thaliana GN YLS8 PE 2 SV 1
blastp_uniprot_sprot sp|Q06819|DIB1_YEAST 1 96 + 96 Gaps:2 65.73 143 31.91 1e-07 Spliceosomal protein DIB1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN DIB1 PE 1 SV 1
blastp_uniprot_sprot sp|P87215|DIMI_SCHPO 15 96 + 82 Gaps:2 56.34 142 33.75 3e-07 Mitosis protein dim1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN dim1 PE 1 SV 1
blastp_uniprot_sprot sp|Q553S5|TXN4A_DICDI 24 96 + 73 Gaps:2 44.38 160 33.80 1e-06 Thioredoxin-like protein 4A homolog OS Dictyostelium discoideum GN txnl4a PE 3 SV 4
blastp_uniprot_sprot sp|Q6FMI2|DIB1_CANGA 15 96 + 82 Gaps:2 56.34 142 30.00 6e-06 Spliceosomal protein DIB1 OS Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN DIB1 PE 3 SV 1
blastp_uniprot_sprot sp|Q75BD8|DIB1_ASHGO 1 96 + 96 Gaps:2 65.73 143 28.72 9e-06 Spliceosomal protein DIB1 OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN DIB1 PE 3 SV 1
rpsblast_cdd gnl|CDD|48535 12 97 + 86 Gaps:2 73.68 114 59.52 4e-29 cd02986 DLP Dim1 family Dim1-like protein (DLP) subfamily DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1 it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif..

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 4 96 93 G3DSA:3.40.30.10 none none IPR012336
SUPERFAMILY 6 95 90 SSF52833 none none IPR012336
PANTHER 2 97 96 PTHR12052 none none IPR004123
PANTHER 2 97 96 PTHR12052:SF4 none none none
Pfam 6 97 92 PF02966 none Mitosis protein DIM1 IPR004123

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting