Protein : Qrob_P0398240.2 Q. robur
Protein Identifier  ? Qrob_P0398240.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) PTHR31407:SF10 - PSBP-LIKE PROTEIN 2, CHLOROPLASTIC (PTHR31407:SF10) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 236  
Kegg Orthology  K02717
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0005509 calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
GO:0009523 photosystem II A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
GO:0009654 photosystem II oxygen evolving complex A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).
GO:0019898 extrinsic component of membrane The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_042895 1 235 + 235 Gaps:1 100.00 234 71.37 1e-123 PsbP-like protein 2
blastp_kegg lcl|pop:POPTR_0010s21710g 1 235 + 235 Gaps:2 100.00 235 71.06 1e-120 POPTRDRAFT_822505 photosystem 2 reaction center PsbP family protein
blastp_kegg lcl|gmx:100813624 1 235 + 235 Gaps:1 100.00 234 70.09 2e-118 psbP-like protein 2 chloroplastic-like
blastp_kegg lcl|gmx:100818731 1 235 + 235 Gaps:1 100.00 234 70.51 7e-117 psbP-like protein 2 chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10032629mg 1 235 + 235 none 100.00 235 68.51 7e-117 hypothetical protein
blastp_kegg lcl|cit:102629493 1 235 + 235 none 100.00 235 68.51 7e-117 psbP-like protein 2 chloroplastic-like
blastp_kegg lcl|cam:101494683 1 235 + 235 Gaps:1 100.00 234 67.09 1e-112 psbP-like protein 2 chloroplastic-like
blastp_kegg lcl|pxb:103930012 1 235 + 235 Gaps:4 100.00 239 67.78 2e-112 psbP-like protein 2 chloroplastic
blastp_kegg lcl|pvu:PHAVU_007G010700g 1 235 + 235 none 100.00 235 67.23 3e-112 hypothetical protein
blastp_kegg lcl|vvi:100242691 1 235 + 235 none 100.00 235 69.79 4e-112 psbP-like protein 2 chloroplastic
blastp_pdb 2xb3_A 83 232 + 150 Gaps:9 96.36 165 29.56 2e-15 mol:protein length:165 PSBP PROTEIN
blastp_pdb 1v2b_B 93 216 + 124 Gaps:21 81.92 177 25.52 7e-08 mol:protein length:177 23-kDa polypeptide of photosystem II oxygen-e
blastp_pdb 1v2b_A 93 216 + 124 Gaps:21 81.92 177 25.52 7e-08 mol:protein length:177 23-kDa polypeptide of photosystem II oxygen-e
blastp_uniprot_sprot sp|O80634|PPL2_ARATH 1 235 + 235 Gaps:3 100.00 238 56.72 5e-90 PsbP-like protein 2 chloroplastic OS Arabidopsis thaliana GN PPL2 PE 1 SV 2
blastp_uniprot_sprot sp|P82538|PPL1_ARATH 51 232 + 182 Gaps:2 80.00 230 38.04 1e-39 PsbP-like protein 1 chloroplastic OS Arabidopsis thaliana GN PPL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q42029|PSBP1_ARATH 29 232 + 204 Gaps:31 89.35 263 25.11 6e-10 Oxygen-evolving enhancer protein 2-1 chloroplastic OS Arabidopsis thaliana GN PSBP1 PE 1 SV 2
blastp_uniprot_sprot sp|P12302|PSBP_SPIOL 29 216 + 188 Gaps:35 83.52 267 26.01 1e-09 Oxygen-evolving enhancer protein 2 chloroplastic OS Spinacia oleracea GN PSBP PE 1 SV 1
blastp_uniprot_sprot sp|Q40407|PSBP_NARPS 93 216 + 124 Gaps:21 54.72 265 29.66 4e-09 Oxygen-evolving enhancer protein 2 chloroplastic OS Narcissus pseudonarcissus GN PSBP PE 2 SV 1
blastp_uniprot_sprot sp|O49080|PSBP_FRIAG 43 216 + 174 Gaps:30 77.27 264 24.51 4e-09 Oxygen-evolving enhancer protein 2 chloroplastic OS Fritillaria agrestis GN PSBP PE 2 SV 1
blastp_uniprot_sprot sp|P11594|PSBP_SINAL 40 232 + 193 Gaps:32 86.54 260 25.33 5e-09 Oxygen-evolving enhancer protein 2 chloroplastic OS Sinapis alba GN PSBP PE 2 SV 2
blastp_uniprot_sprot sp|P93566|PSBP_SOLTU 34 216 + 183 Gaps:33 83.08 260 24.07 6e-09 Oxygen-evolving enhancer protein 2 chloroplastic OS Solanum tuberosum GN PSBP PE 2 SV 1
blastp_uniprot_sprot sp|Q04127|PSBP3_TOBAC 56 216 + 161 Gaps:30 71.80 266 24.08 7e-09 Oxygen-evolving enhancer protein 2-3 chloroplastic OS Nicotiana tabacum GN PSBP3 PE 2 SV 1
blastp_uniprot_sprot sp|Q96334|PSBP_BRAJU 50 232 + 183 Gaps:31 98.62 217 25.23 6e-08 Oxygen-evolving enhancer protein 2 chloroplastic (Fragment) OS Brassica juncea GN PSBP PE 2 SV 1
rpsblast_cdd gnl|CDD|201975 77 233 + 157 Gaps:5 99.39 163 32.10 4e-27 pfam01789 PsbP PsbP. This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+.
rpsblast_cdd gnl|CDD|177676 1 232 + 232 Gaps:55 99.62 260 26.64 7e-13 PLN00042 PLN00042 photosystem II oxygen-evolving enhancer protein 2 Provisional.
rpsblast_cdd gnl|CDD|177696 95 233 + 139 Gaps:22 55.34 262 28.28 2e-10 PLN00066 PLN00066 PsbP domain-containing protein 4 Provisional.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 66 232 167 PF01789 none PsbP IPR002683
PANTHER 1 235 235 PTHR31407:SF10 none none none
SUPERFAMILY 86 233 148 SSF55724 none none IPR016123
PANTHER 1 235 235 PTHR31407 none none none
Gene3D 81 233 153 G3DSA:3.40.1000.10 none none IPR016123

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9

0 Targeting