Protein : Qrob_P0396660.2 Q. robur
Protein Identifier  ? Qrob_P0396660.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG1863//KOG1864//KOG1865//KOG1866//KOG1867//KOG1868//KOG1870//KOG1872//KOG1873//KOG4598 - Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification protein turnover chaperones]. // Ubiquitin-specific protease [Posttranslational modification protein turnover chaperones]. // Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification protein turnover chaperones]. // Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification protein turnover chaperones]. // Ubiquitin-specific protease [Posttranslational modification protein turnover chaperones]. // Ubiquitin C-terminal hydrolase [Posttranslational modification protein turnover chaperones]. // Ubiquitin C-terminal hydrolase [Posttranslational modification protein turnover chaperones]. // Ubiquitin-specific protease [Posttranslational modification protein turnover chaperones]. // Ubiquitin-specific protease [Posttranslational modification protein turnover chaperones]. // Putative ubiquitin-specific protease [Posttranslational modification protein turnover chaperones]. Code Enzyme  EC:3.4.19.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1169  
Kegg Orthology  K11855
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006511 ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO:0036459 ubiquitinyl hydrolase activity Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000527mg 8 1166 + 1159 Gaps:97 99.10 1114 62.41 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_034494 21 1166 + 1146 Gaps:82 97.89 1138 62.03 0.0 Ubiquitin-specific protease 16 putative isoform 1
blastp_kegg lcl|pmum:103319511 8 1163 + 1156 Gaps:96 99.37 1109 62.43 0.0 ubiquitin carboxyl-terminal hydrolase 16
blastp_kegg lcl|vvi:100257420 8 1168 + 1161 Gaps:152 99.51 1213 56.34 0.0 ubiquitin carboxyl-terminal hydrolase 16-like
blastp_kegg lcl|pxb:103964961 8 1166 + 1159 Gaps:89 99.29 1126 60.82 0.0 ubiquitin carboxyl-terminal hydrolase 16-like
blastp_kegg lcl|pxb:103962908 8 1041 + 1034 Gaps:60 96.76 1050 60.73 0.0 ubiquitin carboxyl-terminal hydrolase 16-like
blastp_kegg lcl|mdm:103401985 8 1041 + 1034 Gaps:68 96.79 1060 59.84 0.0 ubiquitin carboxyl-terminal hydrolase 17
blastp_kegg lcl|cic:CICLE_v10000079mg 8 1161 + 1154 Gaps:82 98.86 1145 59.28 0.0 hypothetical protein
blastp_kegg lcl|cit:102625250 8 1161 + 1154 Gaps:99 98.85 1128 59.46 0.0 ubiquitin carboxyl-terminal hydrolase 16-like
blastp_kegg lcl|pop:POPTR_0002s10500g 23 1168 + 1146 Gaps:89 97.72 1141 57.13 0.0 POPTRDRAFT_551649 UBIQUITIN-SPECIFIC PROTEASE 16 family protein
blastp_pdb 3mhs_A 612 914 + 303 Gaps:36 69.12 476 32.52 1e-36 mol:protein length:476 Ubiquitin carboxyl-terminal hydrolase 8
blastp_pdb 3mhh_A 612 914 + 303 Gaps:36 69.12 476 32.52 1e-36 mol:protein length:476 Ubiquitin carboxyl-terminal hydrolase 8
blastp_pdb 3m99_A 612 914 + 303 Gaps:36 69.85 471 32.52 2e-36 mol:protein length:471 Ubiquitin carboxyl-terminal hydrolase 8
blastp_pdb 3nhe_A 612 918 + 307 Gaps:35 95.98 348 31.44 1e-28 mol:protein length:348 Ubiquitin carboxyl-terminal hydrolase 2
blastp_pdb 2hd5_A 612 918 + 307 Gaps:35 93.04 359 31.44 1e-28 mol:protein length:359 Ubiquitin carboxyl-terminal hydrolase 2
blastp_pdb 2y6e_F 611 915 + 305 Gaps:50 95.10 367 26.36 3e-28 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_E 611 915 + 305 Gaps:50 95.10 367 26.36 3e-28 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_D 611 915 + 305 Gaps:50 95.10 367 26.36 3e-28 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_C 611 915 + 305 Gaps:50 95.10 367 26.36 3e-28 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_pdb 2y6e_B 611 915 + 305 Gaps:50 95.10 367 26.36 3e-28 mol:protein length:367 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4
blastp_uniprot_sprot sp|Q9SB51|UBP16_ARATH 21 1031 + 1011 Gaps:100 79.37 1008 54.37 0.0 Ubiquitin carboxyl-terminal hydrolase 16 OS Arabidopsis thaliana GN UBP16 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FKP5|UBP17_ARATH 13 1046 + 1034 Gaps:94 75.79 731 58.66 2e-151 Ubiquitin carboxyl-terminal hydrolase 17 OS Arabidopsis thaliana GN UBP17 PE 2 SV 1
blastp_uniprot_sprot sp|Q67XW5|UBP18_ARATH 591 920 + 330 Gaps:1 52.46 631 54.68 1e-124 Ubiquitin carboxyl-terminal hydrolase 18 OS Arabidopsis thaliana GN UBP18 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SJA1|UBP19_ARATH 86 923 + 838 Gaps:6 58.78 672 53.42 2e-124 Ubiquitin carboxyl-terminal hydrolase 19 OS Arabidopsis thaliana GN UBP19 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FPS9|UBP15_ARATH 83 1032 + 950 Gaps:38 52.38 924 51.03 2e-123 Ubiquitin carboxyl-terminal hydrolase 15 OS Arabidopsis thaliana GN UBP15 PE 2 SV 2
blastp_uniprot_sprot sp|D3ZU96|UBP42_RAT 589 915 + 327 Gaps:14 24.23 1325 41.43 1e-70 Ubiquitin carboxyl-terminal hydrolase 42 OS Rattus norvegicus GN Usp42 PE 3 SV 1
blastp_uniprot_sprot sp|B2RQC2|UBP42_MOUSE 589 915 + 327 Gaps:14 24.24 1324 41.43 2e-70 Ubiquitin carboxyl-terminal hydrolase 42 OS Mus musculus GN Usp42 PE 2 SV 1
blastp_uniprot_sprot sp|E1B9W9|UBP42_BOVIN 589 915 + 327 Gaps:14 24.08 1333 41.12 2e-70 Ubiquitin carboxyl-terminal hydrolase 42 OS Bos taurus GN USP42 PE 3 SV 1
blastp_uniprot_sprot sp|Q9H9J4|UBP42_HUMAN 589 915 + 327 Gaps:14 24.24 1324 40.81 3e-70 Ubiquitin carboxyl-terminal hydrolase 42 OS Homo sapiens GN USP42 PE 1 SV 3
blastp_uniprot_sprot sp|Q9P275|UBP36_HUMAN 589 974 + 386 Gaps:32 32.29 1121 38.12 3e-65 Ubiquitin carboxyl-terminal hydrolase 36 OS Homo sapiens GN USP36 PE 1 SV 3

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 737 809 73 G3DSA:2.20.210.10 none none none
PANTHER 607 930 324 PTHR24006:SF358 none none none
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 608 918 311 SSF54001 none none none
PANTHER 267 299 33 PTHR24006 none none none
PANTHER 92 156 65 PTHR24006:SF358 none none none
PANTHER 267 299 33 PTHR24006:SF358 none none none
ProSitePatterns 92 129 38 PS01360 none Zinc finger MYND-type signature. IPR002893
Phobius 26 1168 1143 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 611 916 306 PS50235 none Ubiquitin specific protease (USP) domain profile. IPR028889
SUPERFAMILY 88 131 44 SSF144232 none none none
ProSitePatterns 612 627 16 PS00972 none Ubiquitin specific protease (USP) domain signature 1. IPR018200
PANTHER 607 930 324 PTHR24006 none none none
PANTHER 92 156 65 PTHR24006 none none none
Pfam 610 913 304 PF00443 none Ubiquitin carboxyl-terminal hydrolase IPR001394
Phobius 6 25 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 92 129 38 PS50865 none Zinc finger MYND-type profile. IPR002893
Pfam 92 129 38 PF01753 none MYND finger IPR002893

1 Localization

Analysis Start End Length
TMHMM 7 25 18

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran2_2002_QTL12_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 4,33 33,33 lod 6,5 9,1

0 Targeting