Protein : Qrob_P0391890.2 Q. robur
Protein Identifier  ? Qrob_P0391890.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=21) PTHR11206:SF87 - MATE EFFLUX FAMILY PROTEIN-RELATED (PTHR11206:SF87) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 447  
Kegg Orthology  K03327
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006855 drug transmembrane transport The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
GO:0015238 drug transmembrane transporter activity Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
GO:0015297 antiporter activity Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out).
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0275330 2 438 + 437 Gaps:19 94.02 485 70.83 0.0 TRANSPARENT TESTA 12 protein putative
blastp_kegg lcl|mtr:MTR_1g108810 2 445 + 444 Gaps:19 95.66 484 68.68 0.0 Protein TRANSPARENT TESTA
blastp_kegg lcl|fve:101308290 3 438 + 436 Gaps:19 92.29 493 70.77 0.0 MATE efflux family protein DTX1-like
blastp_kegg lcl|pmum:103341676 2 438 + 437 Gaps:19 92.68 492 71.27 0.0 MATE efflux family protein 5-like
blastp_kegg lcl|cit:102621442 20 435 + 416 Gaps:19 87.53 497 73.33 0.0 MATE efflux family protein 5-like
blastp_kegg lcl|pop:POPTR_0010s12690g 3 441 + 439 Gaps:20 95.01 481 70.68 0.0 POPTRDRAFT_886050 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10015022mg 2 435 + 434 Gaps:20 92.09 493 71.15 0.0 hypothetical protein
blastp_kegg lcl|sot:102597685 8 438 + 431 Gaps:19 92.78 485 70.22 0.0 MATE efflux family protein 5-like
blastp_kegg lcl|cam:101500523 2 438 + 437 Gaps:19 92.87 491 68.42 0.0 MATE efflux family protein 5-like
blastp_kegg lcl|mdm:103402629 2 438 + 437 Gaps:21 93.28 491 71.40 0.0 MATE efflux family protein 5-like
blastp_pdb 3mku_B 17 417 + 401 Gaps:29 93.04 460 22.66 1e-25 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mku_A 17 417 + 401 Gaps:29 93.04 460 22.66 1e-25 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_B 17 417 + 401 Gaps:29 93.04 460 22.66 1e-25 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_A 17 417 + 401 Gaps:29 93.04 460 22.66 1e-25 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_uniprot_sprot sp|Q9SIA5|DTX1_ARATH 21 438 + 418 Gaps:19 91.81 476 43.94 2e-114 MATE efflux family protein DTX1 OS Arabidopsis thaliana GN DTX1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXM8|MATE7_ARATH 21 438 + 418 Gaps:19 91.81 476 42.33 5e-112 MATE efflux family protein 7 OS Arabidopsis thaliana GN DTXL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA3|MATE6_ARATH 21 438 + 418 Gaps:19 91.81 476 43.02 8e-111 MATE efflux family protein 6 OS Arabidopsis thaliana GN DTXL2 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SIA4|MATE5_ARATH 21 438 + 418 Gaps:19 91.81 476 42.79 2e-108 MATE efflux family protein 5 OS Arabidopsis thaliana GN DTXL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8RWF5|MATE9_ARATH 14 438 + 425 Gaps:19 91.93 483 40.99 2e-108 MATE efflux family protein 9 OS Arabidopsis thaliana GN DTXL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA1|MATE8_ARATH 14 438 + 425 Gaps:19 93.08 477 41.22 3e-108 MATE efflux family protein 8 OS Arabidopsis thaliana GN DTXL4 PE 3 SV 2
blastp_uniprot_sprot sp|Q9LUH2|ALF5_ARATH 20 434 + 415 Gaps:19 90.99 477 41.71 2e-107 MATE efflux family protein ALF5 OS Arabidopsis thaliana GN ALF5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LUH3|LAL5_ARATH 2 434 + 433 Gaps:28 98.29 469 39.05 4e-107 MATE efflux family protein LAL5 OS Arabidopsis thaliana GN LAL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LYT3|TT12_ARATH 21 438 + 418 Gaps:19 86.19 507 37.30 3e-92 Protein TRANSPARENT TESTA 12 OS Arabidopsis thaliana GN TT12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9USK3|YJ2D_SCHPO 20 409 + 390 Gaps:20 75.70 539 33.58 3e-65 Uncharacterized transporter C4B3.13 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPCC4B3.13 PE 3 SV 1
rpsblast_cdd gnl|CDD|162043 31 353 + 323 Gaps:21 100.00 342 30.12 1e-54 TIGR00797 matE putative efflux protein MATE family. The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus a putative ethionine resistance protein of Saccharomyces cerevisiae and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
rpsblast_cdd gnl|CDD|30880 15 440 + 426 Gaps:23 97.80 455 25.39 3e-43 COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms].
rpsblast_cdd gnl|CDD|179333 15 425 + 411 Gaps:39 95.18 456 25.81 7e-34 PRK01766 PRK01766 multidrug efflux protein Reviewed.
rpsblast_cdd gnl|CDD|190033 31 396 + 366 Gaps:20 100.00 161 50.93 9e-26 pfam01554 MatE MatE. The MatE domain.
rpsblast_cdd gnl|CDD|166843 20 425 + 406 Gaps:29 93.32 464 24.48 1e-15 PRK00187 PRK00187 multidrug efflux protein NorA Provisional.
rpsblast_kog gnl|CDD|36561 9 438 + 430 Gaps:21 94.50 473 43.18 1e-112 KOG1347 KOG1347 KOG1347 Uncharacterized membrane protein predicted efflux pump [General function prediction only].

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 4 438 435 PTHR11206 none none none
Phobius 143 162 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 243 264 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 174 196 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 265 303 39 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 87 106 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 28 49 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 132 142 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 197 201 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 61 86 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 107 131 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 304 327 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 223 242 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 27 27 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 31 191 161 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Pfam 235 395 161 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Phobius 402 406 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
TIGRFAM 31 272 242 TIGR00797 "Reactome:REACT_15518","Reactome:REACT_20633" matE: MATE efflux family protein IPR002528
Phobius 163 173 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 429 446 18 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 50 60 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 328 379 52 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 380 401 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 407 428 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 202 222 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 4 438 435 PTHR11206:SF87 none none none

10 Localization

Analysis Start End Length
TMHMM 305 327 22
TMHMM 28 50 22
TMHMM 204 222 18
TMHMM 65 87 22
TMHMM 108 130 22
TMHMM 243 265 22
TMHMM 380 402 22
TMHMM 407 429 22
TMHMM 143 165 22
TMHMM 172 194 22

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting