Protein : Qrob_P0391780.2 Q. robur
Protein Identifier  ? Qrob_P0391780.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K12118 - cryptochrome 1 Code Enzyme  EC:4.1.99.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 682  
Kegg Orthology  K12118
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0003913 DNA photolyase activity Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0002s09730g 1 681 + 681 Gaps:2 100.00 681 87.08 0.0 POPTRDRAFT_830225 cryptochrome 1 family protein
blastp_kegg lcl|pop:POPTR_0005s17100g 1 681 + 681 Gaps:3 100.00 680 86.18 0.0 POPTRDRAFT_559103 cryptochrome 1 family protein
blastp_kegg lcl|pmum:103319649 1 681 + 681 Gaps:2 100.00 679 86.89 0.0 cryptochrome-1
blastp_kegg lcl|pper:PRUPE_ppa002375mg 1 681 + 681 Gaps:2 100.00 679 86.75 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_034899 1 681 + 681 Gaps:3 100.00 682 87.54 0.0 CRY1 isoform 1
blastp_kegg lcl|cic:CICLE_v10000591mg 1 681 + 681 Gaps:2 100.00 681 87.08 0.0 hypothetical protein
blastp_kegg lcl|cit:102630424 1 681 + 681 Gaps:2 100.00 681 86.93 0.0 cryptochrome-1-like
blastp_kegg lcl|vvi:100254022 1 681 + 681 Gaps:6 100.00 681 86.49 0.0 cryptochrome-1-like
blastp_kegg lcl|gmx:100797839 1 681 + 681 Gaps:3 100.00 682 84.75 0.0 GmCRY1b1 GmCRY1b2 cryptochrome-1-like
blastp_kegg lcl|gmx:100233233 1 681 + 681 Gaps:2 100.00 681 84.88 0.0 CRY1a GmCRY1a cryptochrome 1
blastp_pdb 1u3d_A 8 502 + 495 none 97.25 509 87.88 0.0 mol:protein length:509 Cryptochrome 1 apoprotein
blastp_pdb 1u3c_A 8 502 + 495 none 97.25 509 87.88 0.0 mol:protein length:509 Cryptochrome 1 apoprotein
blastp_pdb 1dnp_B 8 478 + 471 Gaps:35 96.82 471 33.99 5e-60 mol:protein length:471 DNA PHOTOLYASE
blastp_pdb 1dnp_A 8 478 + 471 Gaps:35 96.82 471 33.99 5e-60 mol:protein length:471 DNA PHOTOLYASE
blastp_pdb 1qnf_A 8 436 + 429 Gaps:20 88.22 484 29.27 4e-50 mol:protein length:484 PHOTOLYASE
blastp_pdb 1owp_A 8 436 + 429 Gaps:20 88.22 484 29.27 4e-50 mol:protein length:484 Deoxyribodipyrimidine photolyase
blastp_pdb 1owo_A 8 436 + 429 Gaps:20 88.22 484 29.27 4e-50 mol:protein length:484 Deoxyribodipyrimidine photolyase
blastp_pdb 1own_A 8 436 + 429 Gaps:20 88.22 484 29.27 4e-50 mol:protein length:484 Deoxyribodipyrimidine photolyase
blastp_pdb 1owm_A 8 436 + 429 Gaps:20 88.22 484 29.27 4e-50 mol:protein length:484 Deoxyribodipyrimidine photolyase
blastp_pdb 1owl_A 8 436 + 429 Gaps:20 88.22 484 29.27 4e-50 mol:protein length:484 Deoxyribodipyrimidine photolyase
blastp_uniprot_sprot sp|Q43125|CRY1_ARATH 8 681 + 674 Gaps:19 97.94 681 80.96 0.0 Cryptochrome-1 OS Arabidopsis thaliana GN CRY1 PE 1 SV 2
blastp_uniprot_sprot sp|Q96524|CRY2_ARATH 7 509 + 503 Gaps:12 82.19 612 60.64 0.0 Cryptochrome-2 OS Arabidopsis thaliana GN CRY2 PE 1 SV 2
blastp_uniprot_sprot sp|P40115|CRY1_SINAL 1 484 + 484 Gaps:7 97.21 501 59.55 0.0 Cryptochrome-1 OS Sinapis alba GN PHR1 PE 2 SV 1
blastp_uniprot_sprot sp|P00914|PHR_ECOLI 8 478 + 471 Gaps:35 96.61 472 33.99 1e-59 Deoxyribodipyrimidine photo-lyase OS Escherichia coli (strain K12) GN phrB PE 1 SV 1
blastp_uniprot_sprot sp|P12768|PHR_STRGR 6 480 + 475 Gaps:42 98.68 455 34.97 4e-59 Deoxyribodipyrimidine photo-lyase OS Streptomyces griseus GN phr PE 3 SV 1
blastp_uniprot_sprot sp|Q9KNA8|PHR_VIBCH 8 448 + 441 Gaps:30 93.18 469 32.95 2e-58 Deoxyribodipyrimidine photo-lyase OS Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN phrA PE 1 SV 1
blastp_uniprot_sprot sp|Q55081|PHR_SYNY3 8 468 + 461 Gaps:23 92.62 488 31.64 3e-57 Deoxyribodipyrimidine photo-lyase OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN phrA PE 1 SV 1
blastp_uniprot_sprot sp|P25078|PHR_SALTY 8 468 + 461 Gaps:50 94.93 473 34.74 9e-57 Deoxyribodipyrimidine photo-lyase OS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN phrB PE 1 SV 2
blastp_uniprot_sprot sp|Q04449|PHR_BACPE 9 482 + 474 Gaps:34 96.45 479 31.60 7e-54 Deoxyribodipyrimidine photo-lyase OS Bacillus pseudofirmus (strain OF4) GN phr PE 3 SV 2
blastp_uniprot_sprot sp|Q89AJ9|PHR_BUCBP 7 476 + 470 Gaps:41 96.44 478 28.85 3e-51 Deoxyribodipyrimidine photo-lyase OS Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN phrB PE 3 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 7 176 170 SSF52425 none none IPR006050
Gene3D 206 291 86 G3DSA:1.25.40.80 none none none
Pfam 511 626 116 PF12546 none Blue/Ultraviolet sensing protein C terminal IPR020978
ProSiteProfiles 5 134 130 PS51645 none Photolyase/cryptochrome alpha/beta domain profile. IPR006050
PANTHER 1 573 573 PTHR11455 none none none
SUPERFAMILY 192 488 297 SSF48173 none none IPR005101
PRINTS 391 405 15 PR00147 none DNA photolyase signature IPR002081
PRINTS 332 348 17 PR00147 none DNA photolyase signature IPR002081
PRINTS 352 370 19 PR00147 none DNA photolyase signature IPR002081
PANTHER 1 573 573 PTHR11455:SF9 none none none
ProSitePatterns 352 371 20 PS00691 none DNA photolyases class 1 signature 2. IPR018394
ProSitePatterns 332 344 13 PS00394 none DNA photolyases class 1 signature 1. IPR018394
Pfam 7 164 158 PF00875 none DNA photolyase IPR006050
Gene3D 4 164 161 G3DSA:3.40.50.620 none none IPR014729
Gene3D 292 485 194 G3DSA:1.10.579.10 none none none
Pfam 208 481 274 PF03441 none FAD binding domain of DNA photolyase IPR005101
TIGRFAM 6 482 477 TIGR02766 none crypt_chrom_pln: cryptochrome, plant family IPR014134

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting