Protein : Qrob_P0391180.2 Q. robur
Protein Identifier  ? Qrob_P0391180.2 Organism . Name  Quercus robur
Score  93.1 Score Type  egn
Protein Description  (M=5) K11292 - transcription elongation factor SPT6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1502  
Kegg Orthology  K11292
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0006357 regulation of transcription from RNA polymerase II promoter Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
GO:0006139 nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0032784 regulation of DNA-templated transcription, elongation Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100241331 82 1439 + 1358 Gaps:67 84.52 1660 59.66 0.0 transcription elongation factor SPT6-like
blastp_kegg lcl|pmum:103342255 84 1439 + 1356 Gaps:74 84.63 1633 58.83 0.0 transcription elongation factor SPT6
blastp_kegg lcl|tcc:TCM_044643 85 1439 + 1355 Gaps:73 86.09 1617 58.76 0.0 Global transcription factor group B1 isoform 1
blastp_kegg lcl|pper:PRUPE_ppa000164mg 76 1439 + 1364 Gaps:74 89.50 1553 58.42 0.0 hypothetical protein
blastp_kegg lcl|pxb:103966217 84 1439 + 1356 Gaps:74 84.50 1652 56.52 0.0 transcription elongation factor SPT6
blastp_kegg lcl|pvu:PHAVU_001G117200g 84 1408 + 1325 Gaps:54 80.82 1679 57.48 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0016s02900g 84 1429 + 1346 Gaps:64 81.09 1692 57.43 0.0 POPTRDRAFT_255131 hypothetical protein
blastp_kegg lcl|mdm:103426069 84 1439 + 1356 Gaps:79 83.56 1667 56.50 0.0 transcription elongation factor SPT6
blastp_kegg lcl|cmo:103485847 84 1439 + 1356 Gaps:69 86.38 1615 56.70 0.0 transcription elongation factor SPT6
blastp_kegg lcl|csv:101219281 84 1446 + 1363 Gaps:69 86.08 1631 56.13 0.0 transcription elongation factor SPT6-like
blastp_pdb 3psi_A 228 1355 + 1128 Gaps:113 89.66 1219 23.88 5e-60 mol:protein length:1219 Transcription elongation factor SPT6
blastp_pdb 3psf_A 228 1116 + 889 Gaps:105 83.30 1030 23.66 7e-41 mol:protein length:1030 Transcription elongation factor SPT6
blastp_pdb 3psk_D 1205 1355 + 151 Gaps:5 69.19 211 32.88 1e-15 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3psk_C 1205 1355 + 151 Gaps:5 69.19 211 32.88 1e-15 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3psk_B 1205 1355 + 151 Gaps:5 69.19 211 32.88 1e-15 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3psk_A 1205 1355 + 151 Gaps:5 69.19 211 32.88 1e-15 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3psj_A 1205 1355 + 151 Gaps:5 69.52 210 32.88 1e-15 mol:protein length:210 Transcription elongation factor SPT6
blastp_pdb 2l3t_A 1205 1355 + 151 Gaps:5 73.37 199 32.88 1e-15 mol:protein length:199 Transcription elongation factor SPT6
blastp_pdb 3pjp_B 1205 1355 + 151 Gaps:5 73.37 199 32.88 2e-15 mol:protein length:199 Transcription elongation factor SPT6
blastp_pdb 3pjp_A 1205 1355 + 151 Gaps:5 73.37 199 32.88 2e-15 mol:protein length:199 Transcription elongation factor SPT6
blastp_uniprot_sprot sp|Q7KZ85|SPT6H_HUMAN 223 1396 + 1174 Gaps:178 72.19 1726 28.25 3e-133 Transcription elongation factor SPT6 OS Homo sapiens GN SUPT6H PE 1 SV 2
blastp_uniprot_sprot sp|Q62383|SPT6H_MOUSE 223 1396 + 1174 Gaps:168 72.19 1726 28.25 3e-132 Transcription elongation factor SPT6 OS Mus musculus GN Supt6h PE 1 SV 2
blastp_uniprot_sprot sp|Q8UVK2|SPT6H_DANRE 223 1422 + 1200 Gaps:170 73.81 1726 28.18 9e-132 Transcription elongation factor SPT6 OS Danio rerio GN supt6h PE 1 SV 1
blastp_uniprot_sprot sp|Q9W420|SPT6H_DROME 223 1408 + 1186 Gaps:190 69.36 1831 26.46 5e-111 Transcription elongation factor SPT6 OS Drosophila melanogaster GN Spt6 PE 1 SV 1
blastp_uniprot_sprot sp|Q93148|SPT6H_CAEBR 244 1396 + 1153 Gaps:165 79.29 1521 26.70 2e-107 Suppressor of Ty 6 homolog OS Caenorhabditis briggsae GN emb-5 PE 2 SV 2
blastp_uniprot_sprot sp|P34703|SPT6H_CAEEL 240 1394 + 1155 Gaps:161 79.55 1521 26.12 5e-100 Suppressor of Ty 6 homolog OS Caenorhabditis elegans GN emb-5 PE 1 SV 1
blastp_uniprot_sprot sp|Q09915|SPT6_SCHPO 223 1391 + 1169 Gaps:110 80.95 1365 28.24 9e-97 Transcription elongation factor spt6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN spt6 PE 1 SV 2
blastp_uniprot_sprot sp|Q8NIV6|SPT6_NEUCR 223 1410 + 1188 Gaps:118 82.45 1402 25.95 2e-91 Transcription elongation factor spt-6 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN spt-6 PE 3 SV 1
blastp_uniprot_sprot sp|Q2U561|SPT6_ASPOR 85 1398 + 1314 Gaps:146 92.83 1422 26.82 3e-87 Transcription elongation factor spt6 OS Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN spt6 PE 3 SV 1
blastp_uniprot_sprot sp|Q5B7Q7|SPT6_EMENI 85 1398 + 1314 Gaps:155 92.94 1417 26.20 3e-84 Transcription elongation factor spt6 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN spt6 PE 3 SV 2

23 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 301 680 380 SSF158832 none none none
Gene3D 453 684 232 G3DSA:1.10.3500.10 none none IPR023323
Gene3D 845 897 53 G3DSA:1.10.3500.10 none none IPR023323
Pfam 25 117 93 PF14632 none Acidic N-terminal SPT6 IPR028083
SUPERFAMILY 973 1064 92 SSF47781 "Reactome:REACT_216" none IPR010994
SUPERFAMILY 1086 1164 79 SSF50249 none none IPR012340
Pfam 1198 1393 196 PF14633 none SH2 domain IPR000980
PANTHER 13 336 324 PTHR10145 none none none
PANTHER 354 1396 1043 PTHR10145 none none none
PANTHER 13 336 324 PTHR10145:SF6 none none IPR017072
PANTHER 354 1396 1043 PTHR10145:SF6 none none IPR017072
SUPERFAMILY 870 960 91 SSF47781 "Reactome:REACT_216" none IPR010994
SUPERFAMILY 1212 1298 87 SSF55550 none none IPR000980
SMART 1087 1159 73 SM00316 none Ribosomal protein S1-like RNA-binding domain IPR022967
SMART 700 818 119 SM00732 none Likely ribonuclease with RNase H fold. IPR006641
Pfam 859 960 102 PF14635 none Helix-hairpin-helix motif none
Pfam 697 855 159 PF14639 none Holliday-junction resolvase-like of SPT6 IPR028231
Gene3D 709 844 136 G3DSA:3.30.420.140 none none IPR006641
SUPERFAMILY 700 855 156 SSF53098 none none IPR012337
Gene3D 909 1063 155 G3DSA:1.10.150.310 none none IPR023097
ProSiteProfiles 1089 1159 71 PS50126 none S1 domain profile. IPR003029
Gene3D 1084 1163 80 G3DSA:2.40.50.140 none none IPR012340
Pfam 973 1082 110 PF14878 none Death-like domain of SPT6 IPR027999

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting