Protein : Qrob_P0391170.2 Q. robur
Protein Identifier  ? Qrob_P0391170.2 Organism . Name  Quercus robur
Score  85.1 Score Type  egn
Protein Description  (M=5) K11292 - transcription elongation factor SPT6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 2328  
Kegg Orthology  K11292
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0006357 regulation of transcription from RNA polymerase II promoter Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
GO:0006139 nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0032784 regulation of DNA-templated transcription, elongation Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100241331 77 1538 + 1462 Gaps:83 89.58 1660 60.32 0.0 transcription elongation factor SPT6-like
blastp_kegg lcl|vvi:100254333 15 1541 + 1527 Gaps:107 78.16 1891 60.96 0.0 transcription elongation factor SPT6-like
blastp_kegg lcl|pmum:103342255 77 1538 + 1462 Gaps:94 89.90 1633 60.42 0.0 transcription elongation factor SPT6
blastp_kegg lcl|pper:PRUPE_ppa000164mg 77 1538 + 1462 Gaps:93 94.46 1553 60.40 0.0 hypothetical protein
blastp_kegg lcl|mdm:103426069 77 1538 + 1462 Gaps:80 88.66 1667 59.68 0.0 transcription elongation factor SPT6
blastp_kegg lcl|cmo:103485847 20 1538 + 1519 Gaps:110 96.28 1615 58.26 0.0 transcription elongation factor SPT6
blastp_kegg lcl|pop:POPTR_0016s02900g 75 1538 + 1464 Gaps:88 86.88 1692 59.18 0.0 POPTRDRAFT_255131 hypothetical protein
blastp_kegg lcl|gmx:100809136 77 1557 + 1481 Gaps:94 92.36 1649 58.17 0.0 transcription elongation factor SPT6-like
blastp_kegg lcl|pvu:PHAVU_001G117200g 77 1538 + 1462 Gaps:91 88.80 1679 58.89 0.0 hypothetical protein
blastp_kegg lcl|pxb:103966217 77 1538 + 1462 Gaps:83 89.65 1652 59.49 0.0 transcription elongation factor SPT6
blastp_pdb 3psi_A 224 1360 + 1137 Gaps:140 90.81 1219 26.11 4e-56 mol:protein length:1219 Transcription elongation factor SPT6
blastp_pdb 3psf_A 224 1118 + 895 Gaps:126 84.17 1030 26.53 4e-41 mol:protein length:1030 Transcription elongation factor SPT6
blastp_pdb 2l3t_A 1207 1397 + 191 Gaps:5 95.48 199 27.37 4e-14 mol:protein length:199 Transcription elongation factor SPT6
blastp_pdb 3psj_A 1207 1391 + 185 Gaps:5 87.62 210 27.72 1e-13 mol:protein length:210 Transcription elongation factor SPT6
blastp_pdb 3psk_D 1207 1391 + 185 Gaps:5 87.20 211 27.72 1e-13 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3psk_C 1207 1391 + 185 Gaps:5 87.20 211 27.72 1e-13 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3psk_B 1207 1391 + 185 Gaps:5 87.20 211 27.72 1e-13 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3psk_A 1207 1391 + 185 Gaps:5 87.20 211 27.72 1e-13 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3pjp_B 1207 1391 + 185 Gaps:5 92.46 199 27.17 4e-13 mol:protein length:199 Transcription elongation factor SPT6
blastp_pdb 3pjp_A 1207 1391 + 185 Gaps:5 92.46 199 27.17 4e-13 mol:protein length:199 Transcription elongation factor SPT6
blastp_uniprot_sprot sp|Q7KZ85|SPT6H_HUMAN 162 1407 + 1246 Gaps:217 77.58 1726 27.48 1e-123 Transcription elongation factor SPT6 OS Homo sapiens GN SUPT6H PE 1 SV 2
blastp_uniprot_sprot sp|Q8UVK2|SPT6H_DANRE 172 1406 + 1235 Gaps:189 76.94 1726 27.64 4e-123 Transcription elongation factor SPT6 OS Danio rerio GN supt6h PE 1 SV 1
blastp_uniprot_sprot sp|Q62383|SPT6H_MOUSE 162 1406 + 1245 Gaps:215 77.52 1726 27.35 7e-123 Transcription elongation factor SPT6 OS Mus musculus GN Supt6h PE 1 SV 2
blastp_uniprot_sprot sp|Q93148|SPT6H_CAEBR 167 1399 + 1233 Gaps:191 86.13 1521 25.34 7e-99 Suppressor of Ty 6 homolog OS Caenorhabditis briggsae GN emb-5 PE 2 SV 2
blastp_uniprot_sprot sp|Q09915|SPT6_SCHPO 21 1360 + 1340 Gaps:188 93.04 1365 29.69 4e-96 Transcription elongation factor spt6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN spt6 PE 1 SV 2
blastp_uniprot_sprot sp|P34703|SPT6H_CAEEL 154 1405 + 1252 Gaps:201 87.38 1521 25.73 6e-93 Suppressor of Ty 6 homolog OS Caenorhabditis elegans GN emb-5 PE 1 SV 1
blastp_uniprot_sprot sp|Q2U561|SPT6_ASPOR 76 1355 + 1280 Gaps:166 89.73 1422 27.27 1e-91 Transcription elongation factor spt6 OS Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN spt6 PE 3 SV 1
blastp_uniprot_sprot sp|Q9W420|SPT6H_DROME 152 1411 + 1260 Gaps:212 71.87 1831 26.22 3e-90 Transcription elongation factor SPT6 OS Drosophila melanogaster GN Spt6 PE 1 SV 1
blastp_uniprot_sprot sp|Q4WWH6|SPT6_ASPFU 76 1355 + 1280 Gaps:170 89.72 1420 27.86 9e-90 Transcription elongation factor spt6 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN spt6 PE 3 SV 1
blastp_uniprot_sprot sp|Q8NIV6|SPT6_NEUCR 179 1355 + 1177 Gaps:139 82.03 1402 28.17 8e-88 Transcription elongation factor spt-6 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN spt-6 PE 3 SV 1

27 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 207 228 22 Coil none none none
Pfam 22 106 85 PF14632 none Acidic N-terminal SPT6 IPR028083
SMART 1089 1161 73 SM00316 none Ribosomal protein S1-like RNA-binding domain IPR022967
Gene3D 1086 1165 80 G3DSA:2.40.50.140 none none IPR012340
PANTHER 365 1554 1190 PTHR10145 none none none
SUPERFAMILY 1082 1167 86 SSF50249 none none IPR012340
SUPERFAMILY 310 688 379 SSF158832 none none none
Coils 744 772 29 Coil none none none
SUPERFAMILY 983 1066 84 SSF47781 "Reactome:REACT_216" none IPR010994
SMART 710 828 119 SM00732 none Likely ribonuclease with RNase H fold. IPR006641
PANTHER 2 346 345 PTHR10145 none none none
Gene3D 1324 1399 76 G3DSA:3.30.505.10 none none IPR000980
SUPERFAMILY 710 865 156 SSF53098 none none IPR012337
Gene3D 462 694 233 G3DSA:1.10.3500.10 none none IPR023323
Gene3D 855 907 53 G3DSA:1.10.3500.10 none none IPR023323
SUPERFAMILY 880 971 92 SSF47781 "Reactome:REACT_216" none IPR010994
SUPERFAMILY 1347 1397 51 SSF55550 none none IPR000980
Pfam 1193 1393 201 PF14633 none SH2 domain IPR000980
Pfam 983 1085 103 PF14878 none Death-like domain of SPT6 IPR027999
Gene3D 918 1064 147 G3DSA:1.10.150.310 none none IPR023097
ProSiteProfiles 1091 1161 71 PS50126 none S1 domain profile. IPR003029
Gene3D 726 854 129 G3DSA:3.30.420.140 none none IPR006641
Pfam 869 970 102 PF14635 none Helix-hairpin-helix motif none
PANTHER 2 346 345 PTHR10145:SF6 none none IPR017072
PANTHER 365 1554 1190 PTHR10145:SF6 none none IPR017072
Pfam 708 865 158 PF14639 none Holliday-junction resolvase-like of SPT6 IPR028231
Coils 51 72 22 Coil none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting