Protein : Qrob_P0390650.2 Q. robur
Protein Identifier  ? Qrob_P0390650.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K03124 - transcription initiation factor TFIIB Gene Prediction Quality  validated
Protein length 

Sequence

Length: 255  
Kegg Orthology  K03124
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0006352 DNA-templated transcription, initiation Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
GO:0017025 TBP-class protein binding Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs).

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100248187 10 254 + 245 Gaps:1 77.71 314 87.70 1e-157 transcription initiation factor IIB-like
blastp_kegg lcl|tcc:TCM_040769 13 254 + 242 Gaps:3 76.60 312 89.96 3e-157 Cyclin-like family protein
blastp_kegg lcl|rcu:RCOM_1578680 14 254 + 241 Gaps:3 76.28 312 89.50 3e-156 transcription initiation factor iib putative
blastp_kegg lcl|mus:103991437 14 254 + 241 Gaps:3 76.28 312 89.92 8e-156 transcription initiation factor IIB-like
blastp_kegg lcl|mus:103975524 14 254 + 241 Gaps:3 76.28 312 89.50 5e-155 transcription initiation factor IIB-like
blastp_kegg lcl|pda:103706351 10 254 + 245 Gaps:3 77.56 312 86.78 3e-153 transcription initiation factor IIB-like
blastp_kegg lcl|pda:103706134 10 254 + 245 Gaps:3 77.56 312 86.78 5e-153 transcription initiation factor IIB
blastp_kegg lcl|pda:103714059 10 254 + 245 Gaps:3 77.56 312 86.36 8e-152 transcription initiation factor IIB-like
blastp_kegg lcl|mus:103991702 10 254 + 245 Gaps:3 77.56 312 85.54 1e-151 transcription initiation factor IIB
blastp_kegg lcl|sbi:SORBI_02g031020 10 254 + 245 Gaps:3 77.56 312 84.30 2e-149 SORBIDRAFT_02g031020 Sb02g031020 hypothetical protein
blastp_pdb 1c9b_Q 113 253 + 141 Gaps:7 64.73 207 49.25 6e-35 mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
blastp_pdb 1c9b_M 113 253 + 141 Gaps:7 64.73 207 49.25 6e-35 mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
blastp_pdb 1c9b_I 113 253 + 141 Gaps:7 64.73 207 49.25 6e-35 mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
blastp_pdb 1c9b_E 113 253 + 141 Gaps:7 64.73 207 49.25 6e-35 mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
blastp_pdb 1c9b_A 113 253 + 141 Gaps:7 64.73 207 49.25 6e-35 mol:protein length:207 GENERAL TRANSCRIPTION FACTOR IIB
blastp_pdb 2phg_A 114 253 + 140 Gaps:7 64.56 206 48.87 5e-34 mol:protein length:206 Transcription initiation factor IIB
blastp_pdb 1tfb_A 114 253 + 140 Gaps:7 63.94 208 48.87 5e-34 mol:protein length:208 TFIIB
blastp_pdb 3k7a_M 7 251 + 245 Gaps:19 72.46 345 35.60 6e-33 mol:protein length:345 Transcription initiation factor IIB
blastp_pdb 1vol_A 115 253 + 139 Gaps:7 64.71 204 46.97 1e-31 mol:protein length:204 PROTEIN (TRANSCRIPTION FACTOR IIB (TFIIB))
blastp_pdb 1ais_B 113 243 + 131 Gaps:5 63.00 200 29.37 8e-12 mol:protein length:200 PROTEIN (TRANSCRIPTION INITIATION FACTOR IIB)
blastp_uniprot_sprot sp|Q8W0W3|TF2B_ORYSJ 10 254 + 245 Gaps:3 77.56 312 84.30 2e-150 Transcription initiation factor IIB OS Oryza sativa subsp. japonica GN TFIIB PE 1 SV 1
blastp_uniprot_sprot sp|Q9SS44|TF2B2_ARATH 10 254 + 245 Gaps:3 77.56 312 82.23 3e-146 Transcription initiation factor IIB-2 OS Arabidopsis thaliana GN TFIIB2 PE 2 SV 1
blastp_uniprot_sprot sp|P48513|TF2B_SOYBN 10 254 + 245 Gaps:2 77.64 313 82.30 3e-145 Transcription initiation factor IIB OS Glycine max GN TFIIB1 PE 2 SV 1
blastp_uniprot_sprot sp|P48512|TF2B1_ARATH 10 254 + 245 Gaps:3 77.56 312 75.21 8e-135 Transcription initiation factor IIB-1 OS Arabidopsis thaliana GN TFIIB1 PE 1 SV 1
blastp_uniprot_sprot sp|P29052|TF2B_DROME 3 253 + 251 Gaps:13 76.83 315 47.52 6e-65 Transcription initiation factor IIB OS Drosophila melanogaster GN TfIIB PE 2 SV 1
blastp_uniprot_sprot sp|P29054|TF2B_XENLA 14 253 + 240 Gaps:14 72.78 316 49.13 2e-63 Transcription initiation factor IIB OS Xenopus laevis GN gtf2b PE 2 SV 1
blastp_uniprot_sprot sp|Q2KIN8|TF2B_BOVIN 14 253 + 240 Gaps:14 72.78 316 48.26 1e-61 Transcription initiation factor IIB OS Bos taurus GN GTF2B PE 2 SV 1
blastp_uniprot_sprot sp|Q5R886|TF2B_PONAB 14 253 + 240 Gaps:14 72.78 316 48.26 1e-61 Transcription initiation factor IIB OS Pongo abelii GN GTF2B PE 2 SV 1
blastp_uniprot_sprot sp|Q4R3J5|TF2B_MACFA 14 253 + 240 Gaps:14 72.78 316 48.26 1e-61 Transcription initiation factor IIB OS Macaca fascicularis GN GTF2B PE 2 SV 1
blastp_uniprot_sprot sp|Q00403|TF2B_HUMAN 14 253 + 240 Gaps:14 72.78 316 48.26 1e-61 Transcription initiation factor IIB OS Homo sapiens GN GTF2B PE 1 SV 1

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 123 187 65 PF00382 "Reactome:REACT_1788" Transcription factor TFIIB repeat IPR013150
Gene3D 110 210 101 G3DSA:1.10.472.10 none none IPR013763
Gene3D 218 252 35 G3DSA:1.10.472.10 none none IPR013763
SUPERFAMILY 10 58 49 SSF57783 none none none
ProSiteProfiles 9 42 34 PS51134 "Reactome:REACT_1788" Zinc finger TFIIB-type profile. IPR013137
SMART 121 203 83 SM00385 none domain present in cyclins, TFIIB and Retinoblastoma IPR013763
Gene3D 8 58 51 G3DSA:2.20.25.10 none none none
ProSitePatterns 155 170 16 PS00782 none Transcription factor TFIIB repeat signature. IPR023486
SUPERFAMILY 118 208 91 SSF47954 none none IPR013763
Pfam 14 55 42 PF08271 "Reactome:REACT_1788" TFIIB zinc-binding IPR013137
PRINTS 27 47 21 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PRINTS 49 62 14 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PRINTS 223 241 19 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PRINTS 63 84 22 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PRINTS 190 205 16 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PRINTS 163 182 20 PR00685 "Reactome:REACT_1788" Transcription initiation factor IIB signature IPR000812
PANTHER 1 253 253 PTHR11618 "Reactome:REACT_1788";signature_desc=TRANSCRIPTION INITIATION FACTOR IIB-RELATED none IPR000812

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting