Protein : Qrob_P0390600.2 Q. robur
Protein Identifier  ? Qrob_P0390600.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K12876 - RNA-binding protein 8A Gene Prediction Quality  validated
Protein length 

Sequence

Length: 235  
Kegg Orthology  K12876
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

49 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100260882 1 199 + 199 Gaps:23 88.12 202 84.27 4e-91 RNA-binding protein 8A-like
blastp_kegg lcl|rcu:RCOM_1578700 5 213 + 209 Gaps:28 91.96 199 80.33 2e-90 polyadenylate-binding protein putative
blastp_kegg lcl|tcc:TCM_040864 1 213 + 213 Gaps:27 93.47 199 80.65 6e-89 RNA-binding family protein
blastp_kegg lcl|cmo:103492008 1 214 + 214 Gaps:29 93.91 197 78.38 7e-88 RNA-binding protein 8A-B
blastp_kegg lcl|csv:101216717 1 214 + 214 Gaps:29 93.91 197 78.38 7e-88 RNA-binding protein 8A-like
blastp_kegg lcl|cit:102615670 5 212 + 208 Gaps:29 91.33 196 79.33 4e-87 RNA-binding protein 8A-like
blastp_kegg lcl|cic:CICLE_v10016808mg 5 212 + 208 Gaps:29 91.33 196 78.77 2e-86 hypothetical protein
blastp_kegg lcl|pxb:103940311 1 212 + 212 Gaps:24 93.07 202 77.13 7e-86 uncharacterized RNA-binding protein C23A1.09-like
blastp_kegg lcl|pxb:103955892 1 212 + 212 Gaps:24 93.07 202 77.13 7e-86 uncharacterized RNA-binding protein C23A1.09-like
blastp_kegg lcl|pop:POPTR_0009s05550g 6 227 + 222 Gaps:24 97.63 211 68.45 8e-86 POPTRDRAFT_1088020 hypothetical protein
blastp_pdb 2x1g_C 73 199 + 127 Gaps:5 75.15 165 58.06 1e-43 mol:protein length:165 RNA-BINDING PROTEIN 8A
blastp_pdb 2x1g_A 73 199 + 127 Gaps:5 75.15 165 58.06 1e-43 mol:protein length:165 RNA-BINDING PROTEIN 8A
blastp_pdb 1rk8_A 73 199 + 127 Gaps:5 75.15 165 58.06 1e-43 mol:protein length:165 CG8781-PA protein
blastp_pdb 1hl6_C 73 199 + 127 Gaps:5 75.15 165 58.06 1e-43 mol:protein length:165 CG8781 PROTEIN
blastp_pdb 1hl6_A 73 199 + 127 Gaps:5 75.15 165 58.06 1e-43 mol:protein length:165 CG8781 PROTEIN
blastp_pdb 1p27_D 100 199 + 100 Gaps:1 95.28 106 62.38 3e-43 mol:protein length:106 RNA-binding protein 8A
blastp_pdb 1p27_B 100 199 + 100 Gaps:1 95.28 106 62.38 3e-43 mol:protein length:106 RNA-binding protein 8A
blastp_pdb 3ex7_G 100 196 + 97 Gaps:1 77.78 126 63.27 2e-42 mol:protein length:126 RNA-binding protein 8A
blastp_pdb 3ex7_B 100 196 + 97 Gaps:1 77.78 126 63.27 2e-42 mol:protein length:126 RNA-binding protein 8A
blastp_pdb 2hyi_H 110 199 + 90 none 98.90 91 65.56 3e-41 mol:protein length:91 RNA-binding protein 8A
blastp_uniprot_sprot sp|B5DGI7|RBM8A_SALSA 73 199 + 127 Gaps:7 69.71 175 59.84 9e-45 RNA-binding protein 8A OS Salmo salar GN rbm8a PE 2 SV 1
blastp_uniprot_sprot sp|Q28BZ1|RBM8A_XENTR 78 199 + 122 Gaps:9 67.24 174 62.39 9e-44 RNA-binding protein 8A OS Xenopus tropicalis GN rbm8a PE 2 SV 1
blastp_uniprot_sprot sp|Q6PH90|RB8AB_XENLA 78 199 + 122 Gaps:9 67.24 174 61.54 1e-43 RNA-binding protein 8A-B OS Xenopus laevis GN rbm8a-b PE 2 SV 1
blastp_uniprot_sprot sp|Q5D018|RBM8A_DANRE 78 199 + 122 Gaps:7 67.24 174 60.68 2e-43 RNA-binding protein 8A OS Danio rerio GN rbm8a PE 2 SV 1
blastp_uniprot_sprot sp|Q9V535|RBM8A_DROME 73 199 + 127 Gaps:5 75.15 165 58.06 5e-43 RNA-binding protein 8A OS Drosophila melanogaster GN tsu PE 1 SV 1
blastp_uniprot_sprot sp|Q9DF42|RB8AA_XENLA 78 199 + 122 Gaps:7 67.24 174 60.68 8e-43 RNA-binding protein 8A-A OS Xenopus laevis GN rbm8a-a PE 2 SV 1
blastp_uniprot_sprot sp|Q9CWZ3|RBM8A_MOUSE 78 196 + 119 Gaps:7 65.52 174 59.65 8e-42 RNA-binding protein 8A OS Mus musculus GN Rbm8a PE 1 SV 3
blastp_uniprot_sprot sp|Q27W01|RBM8A_RAT 78 196 + 119 Gaps:7 65.52 174 59.65 8e-42 RNA-binding protein 8A OS Rattus norvegicus GN Rbm8a PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y5S9|RBM8A_HUMAN 78 196 + 119 Gaps:7 65.52 174 59.65 8e-42 RNA-binding protein 8A OS Homo sapiens GN RBM8A PE 1 SV 1
blastp_uniprot_sprot sp|Q3ZCE8|RBM8A_BOVIN 78 196 + 119 Gaps:7 65.52 174 59.65 8e-42 RNA-binding protein 8A OS Bos taurus GN RBM8A PE 2 SV 2

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 119 197 79 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
PRINTS 184 196 13 PR01738 none RNA binding motif protein 8 family signature IPR008111
PRINTS 166 182 17 PR01738 none RNA binding motif protein 8 family signature IPR008111
PRINTS 70 82 13 PR01738 none RNA binding motif protein 8 family signature IPR008111
SUPERFAMILY 80 195 116 SSF54928 none none none
Gene3D 76 201 126 G3DSA:3.30.70.330 none none IPR012677
SMART 120 193 74 SM00360 none RNA recognition motif IPR000504
PANTHER 73 212 140 PTHR23139 none none none
Pfam 121 190 70 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2002_QTL7_peak_Bud_burst_A4 Qrob_Chr01 1 s_1DFK66_275 s_1AMVCC_444 3,3 0 7,3 lod 9,4 14,8
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting