Protein : Qrob_P0387230.2 Q. robur
Protein Identifier  ? Qrob_P0387230.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) 2.5.1.39 - 4-hydroxybenzoate polyprenyltransferase. Code Enzyme  EC:2.5.1.39
Gene Prediction Quality  validated Protein length 

Sequence

Length: 158  
Kegg Orthology  K06125
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0004659 prenyltransferase activity Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor).

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103959032 1 157 + 157 none 39.95 393 91.72 5e-98 4-hydroxybenzoate polyprenyltransferase mitochondrial-like
blastp_kegg lcl|pxb:103966541 1 157 + 157 none 39.75 395 91.72 1e-97 4-hydroxybenzoate polyprenyltransferase mitochondrial-like
blastp_kegg lcl|pxb:103964019 1 157 + 157 none 39.75 395 91.72 1e-97 4-hydroxybenzoate polyprenyltransferase mitochondrial-like
blastp_kegg lcl|pper:PRUPE_ppa006751mg 1 157 + 157 none 39.65 396 91.72 6e-97 hypothetical protein
blastp_kegg lcl|sot:102595300 1 155 + 155 none 39.44 393 90.32 1e-96 4-hydroxybenzoate polyprenyltransferase mitochondrial-like
blastp_kegg lcl|fve:101292017 1 157 + 157 none 40.99 383 91.08 3e-96 4-hydroxybenzoate polyprenyltransferase mitochondrial-like
blastp_kegg lcl|pop:POPTR_0005s09660g 1 155 + 155 none 40.05 387 89.68 6e-96 POPTRDRAFT_207971 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10031746mg 1 155 + 155 none 39.24 395 90.32 1e-95 hypothetical protein
blastp_kegg lcl|cit:102612886 1 155 + 155 none 39.24 395 90.32 1e-95 4-hydroxybenzoate polyprenyltransferase mitochondrial-like
blastp_kegg lcl|pper:PRUPE_ppa019340mg 1 157 + 157 none 39.15 401 90.45 6e-95 hypothetical protein
blastp_uniprot_sprot sp|Q93YP7|4HPT_ARATH 1 154 + 154 none 37.84 407 79.22 2e-80 4-hydroxybenzoate polyprenyltransferase mitochondrial OS Arabidopsis thaliana GN PPT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8W404|PGT2_LITER 1 155 + 155 none 50.65 306 67.74 7e-68 4-hydroxybenzoate geranyltransferase 2 OS Lithospermum erythrorhizon GN PGT-2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8W405|PGT1_LITER 1 155 + 155 none 50.49 307 64.52 7e-66 4-hydroxybenzoate geranyltransferase 1 OS Lithospermum erythrorhizon GN PGT-1 PE 1 SV 1
blastp_uniprot_sprot sp|Q96H96|COQ2_HUMAN 1 155 + 155 none 41.78 371 58.06 8e-61 4-hydroxybenzoate polyprenyltransferase mitochondrial OS Homo sapiens GN COQ2 PE 1 SV 1
blastp_uniprot_sprot sp|Q2KIQ4|COQ2_BOVIN 1 155 + 155 none 41.78 371 58.06 2e-59 4-hydroxybenzoate polyprenyltransferase mitochondrial OS Bos taurus GN COQ2 PE 2 SV 1
blastp_uniprot_sprot sp|Q499N4|COQ2_RAT 1 155 + 155 none 41.44 374 59.35 5e-57 4-hydroxybenzoate polyprenyltransferase mitochondrial OS Rattus norvegicus GN Coq2 PE 2 SV 1
blastp_uniprot_sprot sp|Q66JT7|COQ2_MOUSE 1 155 + 155 none 41.44 374 58.71 2e-56 4-hydroxybenzoate polyprenyltransferase mitochondrial OS Mus musculus GN Coq2 PE 2 SV 2
blastp_uniprot_sprot sp|Q8I7J4|COQ2_CAEEL 2 151 + 150 none 42.13 356 56.00 2e-54 4-hydroxybenzoate polyprenyltransferase mitochondrial OS Caenorhabditis elegans GN coq-2 PE 3 SV 2
blastp_uniprot_sprot sp|Q9VHS7|COQ2_DROME 1 155 + 155 none 39.54 392 52.90 5e-53 4-hydroxybenzoate polyprenyltransferase mitochondrial OS Drosophila melanogaster GN Coq2 PE 2 SV 1
blastp_uniprot_sprot sp|Q298G6|COQ2_DROPS 1 155 + 155 none 39.04 397 52.90 6e-53 4-hydroxybenzoate polyprenyltransferase mitochondrial OS Drosophila pseudoobscura pseudoobscura GN coq2 PE 3 SV 1
rpsblast_cdd gnl|CDD|178405 1 157 + 157 none 54.33 289 85.35 3e-84 PLN02809 PLN02809 4-hydroxybenzoate nonaprenyltransferase.
rpsblast_cdd gnl|CDD|183808 1 153 + 153 Gaps:1 48.41 314 50.66 8e-46 PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase Reviewed.
rpsblast_cdd gnl|CDD|130539 1 153 + 153 Gaps:1 54.09 281 53.95 2e-45 TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase proteobacterial. This model represents a family of integral membrane proteins that condenses para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for many but not all members the activity seen (e.g. octaprenyltransferase in E. coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial) with several characterized members from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
rpsblast_cdd gnl|CDD|183790 1 153 + 153 Gaps:1 53.90 282 39.47 8e-40 PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase Reviewed.
rpsblast_cdd gnl|CDD|183789 1 154 + 154 Gaps:1 53.68 285 43.14 3e-36 PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase Reviewed.
rpsblast_cdd gnl|CDD|183804 1 153 + 153 Gaps:3 53.10 290 33.12 1e-29 PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase Reviewed.
rpsblast_cdd gnl|CDD|30731 1 155 + 155 Gaps:2 53.63 289 38.71 9e-23 COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism].
rpsblast_cdd gnl|CDD|162380 1 153 + 153 Gaps:7 53.19 282 34.00 1e-15 TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474 it is likely that this HMM represents 4-hydroxybenzoate polyprenyltransferase a critical enzyme of ubiquinone biosynthesis in the Archaea Gram-positive bacteria Aquifex aeolicus the Chlamydias etc.
rpsblast_cdd gnl|CDD|171787 2 156 + 155 Gaps:3 53.74 294 26.58 3e-15 PRK12873 ubiA prenyltransferase Reviewed.
rpsblast_cdd gnl|CDD|183814 2 147 + 146 Gaps:5 51.76 284 31.97 1e-10 PRK12888 ubiA prenyltransferase Reviewed.

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 125 135 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 156 157 2 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 1 156 156 PTHR11048:SF7 none none none
Phobius 10 21 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 55 80 26 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 1 156 156 PTHR11048 none none none
Phobius 81 100 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 106 124 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 26 34 9 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 22 25 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 101 105 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 35 54 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 9 9 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Pfam 1 142 142 PF01040 none UbiA prenyltransferase family IPR000537
Phobius 136 155 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

3 Localization

Analysis Start End Length
TMHMM 34 56 22
TMHMM 81 103 22
TMHMM 5 27 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting