Protein : Qrob_P0383290.2 Q. robur
Protein Identifier  ? Qrob_P0383290.2 Organism . Name  Quercus robur
Protein Description  (M=6) PTHR11730:SF17 - AMMONIUM TRANSPORTER MEP2 (PTHR11730:SF17) Alias (in v1)  Qrob_P0340310.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 471  
Kegg Orthology  K03320
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0008519 ammonium transmembrane transporter activity Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO:0015696 ammonium transport The directed movement of ammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO:0072488 ammonium transmembrane transport The directed movement of ammonium across a membrane by means of some agent such as a transporter or pore. Ammonium is the cation NH4+.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100248822 1 462 + 462 Gaps:4 97.48 476 78.02 0.0 ammonium transporter 3 member 3-like
blastp_kegg lcl|pda:103718844 19 463 + 445 Gaps:8 95.31 469 71.81 0.0 ammonium transporter 3 member 1-like
blastp_kegg lcl|bdi:100829578 18 463 + 446 Gaps:6 93.58 483 71.02 0.0 ammonium transporter 3 member 1-like
blastp_kegg lcl|bdi:100830191 18 463 + 446 Gaps:6 92.06 491 70.35 0.0 ammonium transporter 3 member 1-like
blastp_kegg lcl|osa:4324937 18 463 + 446 Gaps:11 91.77 498 69.15 0.0 Os01g0870300
blastp_kegg lcl|vvi:100259492 4 463 + 460 Gaps:5 95.88 485 68.39 0.0 ammonium transporter 3 member 1-like
blastp_kegg lcl|mus:103986370 7 463 + 457 Gaps:5 95.65 483 69.05 0.0 ammonium transporter 3 member 1-like
blastp_kegg lcl|vvi:100256159 4 463 + 460 Gaps:5 95.88 485 67.53 0.0 ammonium transporter 3 member 1-like
blastp_kegg lcl|dosa:Os02t0550800-01 4 464 + 461 Gaps:8 96.88 480 67.74 0.0 Os02g0550800 AMMONIUM_TRANSPORTER_3 3 AMT3 3 Ammonium transporter family protein.
blastp_kegg lcl|osa:4329628 4 464 + 461 Gaps:8 96.88 480 67.74 0.0 Os02g0550800
blastp_pdb 2ns1_A 20 448 + 429 Gaps:28 97.82 412 35.98 6e-64 mol:protein length:412 Ammonia channel
blastp_pdb 1xqf_A 20 448 + 429 Gaps:28 96.41 418 35.98 9e-64 mol:protein length:418 Probable ammonium transporter
blastp_pdb 1xqe_A 20 448 + 429 Gaps:28 96.41 418 35.98 9e-64 mol:protein length:418 Probable ammonium transporter
blastp_pdb 3c1g_A 20 448 + 429 Gaps:28 95.05 424 35.98 1e-63 mol:protein length:424 Ammonia channel
blastp_pdb 2nop_A 20 448 + 429 Gaps:28 95.05 424 35.98 1e-63 mol:protein length:424 Ammonia channel
blastp_pdb 2nmr_A 20 448 + 429 Gaps:28 95.05 424 35.98 1e-63 mol:protein length:424 Ammonia channel
blastp_pdb 2nuu_F 24 448 + 425 Gaps:28 96.14 415 36.09 2e-63 mol:protein length:415 Ammonia channel
blastp_pdb 2nuu_E 24 448 + 425 Gaps:28 96.14 415 36.09 2e-63 mol:protein length:415 Ammonia channel
blastp_pdb 2nuu_D 24 448 + 425 Gaps:28 96.14 415 36.09 2e-63 mol:protein length:415 Ammonia channel
blastp_pdb 2nuu_C 24 448 + 425 Gaps:28 96.14 415 36.09 2e-63 mol:protein length:415 Ammonia channel
blastp_uniprot_sprot sp|Q84KJ6|AMT31_ORYSJ 18 463 + 446 Gaps:11 91.77 498 69.15 0.0 Ammonium transporter 3 member 1 OS Oryza sativa subsp. japonica GN AMT3-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q69T29|AMT33_ORYSJ 4 464 + 461 Gaps:8 96.88 480 67.74 0.0 Ammonium transporter 3 member 3 OS Oryza sativa subsp. japonica GN AMT3-3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M6N7|AMT2_ARATH 17 462 + 446 Gaps:9 93.26 475 65.69 0.0 Ammonium transporter 2 OS Arabidopsis thaliana GN AMT2 PE 1 SV 2
blastp_uniprot_sprot sp|Q851M9|AMT32_ORYSJ 2 464 + 463 Gaps:5 97.70 479 63.89 0.0 Ammonium transporter 3 member 2 OS Oryza sativa subsp. japonica GN AMT3-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q84KJ7|AMT21_ORYSJ 17 462 + 446 Gaps:5 91.56 486 63.82 0.0 Ammonium transporter 2 member 1 OS Oryza sativa subsp. japonica GN AMT2-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8S230|AMT22_ORYSJ 8 456 + 449 Gaps:7 90.22 501 59.73 0.0 Ammonium transporter 2 member 2 OS Oryza sativa subsp. japonica GN AMT2-2 PE 2 SV 2
blastp_uniprot_sprot sp|Q8S233|AMT23_ORYSJ 17 456 + 440 Gaps:8 89.34 497 61.26 0.0 Ammonium transporter 2 member 3 OS Oryza sativa subsp. japonica GN AMT2-3 PE 2 SV 1
blastp_uniprot_sprot sp|O26759|Y663_METTH 23 450 + 428 Gaps:27 97.82 412 37.97 8e-71 Putative ammonium transporter MTH_663 OS Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN MTH_663 PE 3 SV 1
blastp_uniprot_sprot sp|O66515|AMT_AQUAE 23 450 + 428 Gaps:29 94.33 423 37.59 3e-68 Ammonia channel OS Aquifex aeolicus (strain VF5) GN amt PE 1 SV 1
blastp_uniprot_sprot sp|P69681|AMTB_ECOLI 10 448 + 439 Gaps:28 96.50 428 36.32 2e-65 Ammonia channel OS Escherichia coli (strain K12) GN amtB PE 1 SV 1

33 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 27 448 422 TIGR00836 none amt: ammonium transporter IPR001905
Phobius 198 216 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 382 400 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PRINTS 318 336 19 PR00342 none Rhesus blood group protein signature IPR002229
PRINTS 137 153 17 PR00342 none Rhesus blood group protein signature IPR002229
PRINTS 263 285 23 PR00342 none Rhesus blood group protein signature IPR002229
PRINTS 232 250 19 PR00342 none Rhesus blood group protein signature IPR002229
Phobius 154 164 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 29 448 420 PF00909 none Ammonium Transporter Family IPR024041
Phobius 315 335 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 265 284 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 228 245 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 135 153 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 336 355 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 217 227 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 187 197 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 52 62 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 246 264 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 401 426 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 22 430 409 SSF111352 none none IPR024041
Phobius 83 134 52 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 427 470 44 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 356 381 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 310 314 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 21 430 410 G3DSA:1.10.3430.10 none none IPR029020
PANTHER 15 461 447 PTHR11730:SF17 none none none
Phobius 29 51 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 285 290 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 15 461 447 PTHR11730 none none IPR001905
Phobius 165 186 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

11 Localization

Analysis Start End Length
TMHMM 32 54 22
TMHMM 315 337 22
TMHMM 358 380 22
TMHMM 131 153 22
TMHMM 292 311 19
TMHMM 59 81 22
TMHMM 400 422 22
TMHMM 160 182 22
TMHMM 263 285 22
TMHMM 197 216 19
TMHMM 229 248 19

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting