Protein : Qrob_P0380860.2 Q. robur
Protein Identifier  ? Qrob_P0380860.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) K15272 - solute carrier family 35 (UDP-sugar transporter), member A1/2/3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 337  
Kegg Orthology  K15272
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0000139 Golgi membrane The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
GO:0005351 sugar:proton symporter activity Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in).
GO:0008643 carbohydrate transport The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
GO:0015780 nucleotide-sugar transport The directed movement of nucleotide-sugars into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO:0005338 nucleotide-sugar transmembrane transporter activity Enables the transfer of a nucleotide-sugar from one side of the membrane to the other. A nucleotide-sugar is any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_005197 1 335 + 335 none 100.00 335 85.37 0.0 Nucleotide-sugar transporter family protein
blastp_kegg lcl|rcu:RCOM_0149740 1 335 + 335 none 100.00 335 83.88 0.0 cmp-sialic acid transporter putative
blastp_kegg lcl|cmo:103488687 1 335 + 335 Gaps:1 83.17 404 84.82 0.0 CMP-sialic acid transporter 1
blastp_kegg lcl|csv:101205341 1 335 + 335 Gaps:2 100.00 337 84.57 0.0 CMP-sialic acid transporter 1-like
blastp_kegg lcl|vvi:100244718 1 335 + 335 Gaps:4 100.00 331 84.89 0.0 CMP-sialic acid transporter-like
blastp_kegg lcl|pper:PRUPE_ppa008370mg 1 335 + 335 none 100.00 335 82.69 0.0 hypothetical protein
blastp_kegg lcl|cam:101503604 1 335 + 335 none 100.00 335 82.09 0.0 CMP-sialic acid transporter 1-like
blastp_kegg lcl|sot:102599534 1 335 + 335 none 100.00 335 81.49 0.0 CMP-sialic acid transporter 1-like
blastp_kegg lcl|mdm:103454634 1 335 + 335 none 100.00 335 81.19 0.0 CMP-sialic acid transporter 1
blastp_kegg lcl|pmum:103337681 1 335 + 335 none 100.00 335 81.79 0.0 CMP-sialic acid transporter 1
blastp_uniprot_sprot sp|Q8LGE9|CSTR1_ARATH 3 335 + 333 Gaps:2 98.53 340 75.82 0.0 CMP-sialic acid transporter 1 OS Arabidopsis thaliana GN At5g41760 PE 2 SV 1
blastp_uniprot_sprot sp|F4JN00|CSTR4_ARATH 5 305 + 301 Gaps:13 84.09 352 42.23 1e-67 CMP-sialic acid transporter 4 OS Arabidopsis thaliana GN At4g35335 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GY97|CSTR2_ARATH 12 332 + 321 Gaps:20 78.57 406 29.15 5e-39 CMP-sialic acid transporter 2 OS Arabidopsis thaliana GN At2g43240 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C5H6|CSTR3_ARATH 12 306 + 295 Gaps:13 74.07 405 28.33 2e-38 CMP-sialic acid transporter 3 OS Arabidopsis thaliana GN UTR6 PE 2 SV 1
blastp_uniprot_sprot sp|Q61420|S35A1_MOUSE 8 306 + 299 Gaps:12 88.99 336 31.77 2e-37 CMP-sialic acid transporter OS Mus musculus GN Slc35a1 PE 1 SV 2
blastp_uniprot_sprot sp|P78382|S35A1_HUMAN 8 306 + 299 Gaps:12 88.72 337 31.44 1e-36 CMP-sialic acid transporter OS Homo sapiens GN SLC35A1 PE 2 SV 1
blastp_uniprot_sprot sp|Q93890|SRF3_CAEEL 40 319 + 280 Gaps:19 75.82 368 33.69 2e-36 UDP-galactose/UDP-N-acetylglucosamine transporter srf-3 OS Caenorhabditis elegans GN srf-3 PE 1 SV 5
blastp_uniprot_sprot sp|O08520|S35A1_CRIGR 8 306 + 299 Gaps:12 88.99 336 30.77 3e-36 CMP-sialic acid transporter OS Cricetulus griseus GN SLC35A1 PE 2 SV 1
blastp_uniprot_sprot sp|A4IHW3|S35A4_XENTR 3 305 + 303 Gaps:14 91.90 321 29.49 3e-34 Probable UDP-sugar transporter protein SLC35A4 OS Xenopus tropicalis GN slc35a4 PE 2 SV 1
blastp_uniprot_sprot sp|O77592|S35A3_CANFA 31 307 + 277 Gaps:27 86.50 326 32.62 2e-33 UDP-N-acetylglucosamine transporter OS Canis familiaris GN SLC35A3 PE 2 SV 1
rpsblast_cdd gnl|CDD|112934 77 292 + 216 Gaps:9 89.50 238 39.91 1e-45 pfam04142 Nuc_sug_transp Nucleotide-sugar transporter. This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human SLC35A1 transports CMP-sialic acid SLC35A2 transports UDP-galactose and SLC35A3 transports UDP-GlcNAc.
rpsblast_cdd gnl|CDD|129885 77 303 + 227 Gaps:20 98.65 222 29.68 5e-22 TIGR00803 nst UDP-galactose transporter. The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms exchanging a nucleotide-sugar for a nucleotide. Thus CMP-sialic acid is exchanged for CMP GDP-mannose is preferentially exchanged for GMP and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g. GDP-fucose UDP-xylose UDP-glucose UDP-N-acetylgalactosamine etc.) may also be transported in exchange for various nucleotides but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound synthesized in the cytoplasm to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
rpsblast_kog gnl|CDD|37445 3 307 + 305 Gaps:16 89.57 345 39.48 5e-74 KOG2234 KOG2234 KOG2234 Predicted UDP-galactose transporter [Carbohydrate transport and metabolism].

29 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 55 73 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 255 260 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 74 294 221 PF04142 none Nucleotide-sugar transporter IPR007271
PANTHER 1 319 319 PTHR10231:SF40 none none none
Phobius 232 254 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 213 231 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 4 4 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 307 336 30 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 14 18 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
TIGRFAM 77 303 227 TIGR00803 "Reactome:REACT_15518" nst: UDP-galactose transporter IPR004689
Phobius 121 126 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 261 281 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 74 95 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 196 212 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 287 306 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 18 18 SIGNAL_PEPTIDE none Signal peptide region none
PIRSF 1 335 335 PIRSF005799 none none IPR021189
Phobius 127 144 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 319 319 PTHR10231 none none IPR007271
Phobius 19 33 15 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 185 195 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 96 100 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 67 143 77 SSF103481 none none none
Phobius 5 13 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 101 120 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 282 286 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 145 163 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 34 54 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 164 184 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

10 Localization

Analysis Start End Length
TMHMM 289 311 22
SignalP_EUK 1 18 17
TMHMM 232 254 22
TMHMM 127 144 17
TMHMM 164 183 19
TMHMM 3 25 22
TMHMM 35 54 19
TMHMM 74 96 22
TMHMM 190 212 22
TMHMM 101 120 19

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8

0 Targeting