Protein : Qrob_P0379730.2 Q. robur
Protein Identifier  ? Qrob_P0379730.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF03572//PF13180 - Peptidase family S41 // PDZ domain Code Enzyme  EC:3.4.21.102
Gene Prediction Quality  validated Protein length 

Sequence

Length: 563  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0008236 serine-type peptidase activity Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103453505 1 560 + 560 Gaps:25 99.63 547 70.83 0.0 C-terminal processing peptidase chloroplastic-like
blastp_kegg lcl|pxb:103933641 1 561 + 561 Gaps:25 99.82 547 70.33 0.0 carboxyl-terminal-processing peptidase 2 chloroplastic-like
blastp_kegg lcl|pmum:103323804 1 562 + 562 Gaps:29 100.00 539 72.36 0.0 C-terminal processing peptidase chloroplastic
blastp_kegg lcl|fve:101293876 1 562 + 562 Gaps:28 100.00 542 71.77 0.0 C-terminal processing peptidase chloroplastic-like
blastp_kegg lcl|tcc:TCM_021046 1 562 + 562 Gaps:17 89.97 608 67.46 0.0 Peptidase S41 family protein isoform 1
blastp_kegg lcl|cic:CICLE_v10004718mg 1 562 + 562 Gaps:33 100.00 529 72.21 0.0 hypothetical protein
blastp_kegg lcl|cit:102628122 1 562 + 562 Gaps:33 100.00 529 72.21 0.0 C-terminal processing peptidase chloroplastic-like
blastp_kegg lcl|vvi:100252881 1 562 + 562 Gaps:67 100.00 497 74.65 0.0 carboxyl-terminal-processing protease-like
blastp_kegg lcl|pop:POPTR_0008s17400g 104 562 + 459 Gaps:17 86.49 518 77.46 0.0 POPTRDRAFT_874780 hypothetical protein
blastp_kegg lcl|mdm:103405350 116 562 + 447 Gaps:17 93.89 458 78.14 0.0 C-terminal processing peptidase chloroplastic-like
blastp_pdb 1fc6_A 163 550 + 388 Gaps:24 98.45 388 50.00 4e-114 mol:protein length:388 PHOTOSYSTEM II D1 PROTEASE
blastp_pdb 1fcf_A 163 550 + 388 Gaps:24 98.45 388 49.48 7e-113 mol:protein length:388 PHOTOSYSTEM II D1 PROTEASE
blastp_pdb 1fc9_A 163 550 + 388 Gaps:24 98.45 388 49.48 7e-113 mol:protein length:388 PHOTOSYSTEM II D1 PROTEASE
blastp_pdb 1fc7_A 163 550 + 388 Gaps:24 98.45 388 49.48 7e-113 mol:protein length:388 PHOTOSYSTEM II D1 PROTEASE
blastp_uniprot_sprot sp|O04073|CTPA_ACUOB 159 550 + 392 Gaps:24 83.19 464 49.74 8e-113 C-terminal processing peptidase chloroplastic OS Acutodesmus obliquus GN ctpA PE 1 SV 1
blastp_uniprot_sprot sp|P42784|CTPA_SYNP2 162 531 + 370 Gaps:27 84.30 414 46.42 1e-87 Carboxyl-terminal-processing protease OS Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN ctpA PE 3 SV 2
blastp_uniprot_sprot sp|Q55669|CTPA_SYNY3 147 528 + 382 Gaps:25 85.01 427 44.90 6e-87 Carboxyl-terminal-processing protease OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN ctpA PE 3 SV 1
blastp_uniprot_sprot sp|Q44879|CTPA_BARBK 213 545 + 333 Gaps:31 71.89 434 32.37 8e-33 Carboxy-terminal-processing protease OS Bartonella bacilliformis (strain ATCC 35685 / KC583) GN ctpA PE 3 SV 1
blastp_uniprot_sprot sp|Q6GGY8|CTPAL_STAAR 202 532 + 331 Gaps:27 61.69 496 30.72 2e-29 Probable CtpA-like serine protease OS Staphylococcus aureus (strain MRSA252) GN SAR1432 PE 3 SV 1
blastp_uniprot_sprot sp|Q7A5M9|CTPAL_STAAN 213 532 + 320 Gaps:27 59.48 496 31.86 3e-29 Probable CtpA-like serine protease OS Staphylococcus aureus (strain N315) GN SA1253 PE 1 SV 1
blastp_uniprot_sprot sp|Q99U67|CTPAL_STAAM 213 532 + 320 Gaps:27 59.48 496 31.86 3e-29 Probable CtpA-like serine protease OS Staphylococcus aureus (strain Mu50 / ATCC 700699) GN SAV1420 PE 3 SV 1
blastp_uniprot_sprot sp|Q2YXZ9|CTPAL_STAAB 213 532 + 320 Gaps:27 59.48 496 31.53 6e-29 Probable CtpA-like serine protease OS Staphylococcus aureus (strain bovine RF122 / ET3-1) GN SAB1275c PE 3 SV 1
blastp_uniprot_sprot sp|Q5HG01|CTPAL_STAAC 213 532 + 320 Gaps:27 59.48 496 31.53 7e-29 Probable CtpA-like serine protease OS Staphylococcus aureus (strain COL) GN SACOL1455 PE 3 SV 1
blastp_uniprot_sprot sp|Q8NWR2|CTPAL_STAAW 213 532 + 320 Gaps:27 59.48 496 31.53 7e-29 Probable CtpA-like serine protease OS Staphylococcus aureus (strain MW2) GN MW1310 PE 3 SV 1
rpsblast_cdd gnl|CDD|177681 162 561 + 400 Gaps:15 100.00 389 76.35 0.0 PLN00049 PLN00049 carboxyl-terminal processing protease Provisional.
rpsblast_cdd gnl|CDD|161775 207 533 + 327 Gaps:32 91.32 334 39.34 9e-70 TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
rpsblast_cdd gnl|CDD|31136 141 539 + 399 Gaps:30 91.87 406 34.32 8e-66 COG0793 Prc Periplasmic protease [Cell envelope biogenesis outer membrane].
rpsblast_cdd gnl|CDD|188415 192 538 + 347 Gaps:30 33.61 973 37.31 1e-49 TIGR03900 prc_long_Delta putative carboxyl-terminal-processing protease deltaproteobacterial. This model describes a multidomain protein of about 1070 residues restricted to the order Myxococcales in the Deltaproteobacteria. Members contain a PDZ domain (pfam00595) an S41 family peptidase domain (pfam03572) and an SH3 domain (pfam06347). A core region of this family including PDZ and S41 regions is described by TIGR00225 C-terminal processing peptidase which recognizes the Prc protease. The species distribution of this family approximates that of largely Deltaproteobacterial C-terminal putative protein-sorting domain TIGR03901 analogous to LPXTG and PEP-CTERM but the co-occurrence may reflect shared restriction to the Myxococcales rather than a substrate/target relationship.
rpsblast_cdd gnl|CDD|143476 422 531 + 110 Gaps:2 51.18 211 52.78 7e-42 cd07560 Peptidase_S41_CPP C-terminal processing peptidase serine protease family S41. The C-terminal processing peptidase (CPP EC 3.4.21.102) also known as tail-specific protease (tsp) the photosystem II D1 C-terminal processing protease (D1P) and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide Xaa-Yaa-Zaa in which Xaa is preferably Ala or Leu Yaa is preferably Ala or Tyr and Zaa is preferably Ala but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. In E. coli it is involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 (PBP3). In the plant chloroplast the enzyme removes the C-terminal extension of the D1 polypeptide of photosystem II allowing the light-driven assembly of the tetranuclear manganese cluster which is responsible for photosynthetic water oxidation.
rpsblast_cdd gnl|CDD|197601 328 531 + 204 Gaps:19 97.40 192 40.64 6e-40 smart00245 TSPc tail specific protease. tail specific protease.

22 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 131 131 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 251 326 76 G3DSA:2.30.42.10 none none IPR001478
Pfam 262 330 69 PF13180 none PDZ domain IPR001478
Pfam 416 528 113 PF03572 none Peptidase family S41 IPR005151
SMART 246 323 78 SM00228 none Domain present in PSD-95, Dlg, and ZO-1/2. IPR001478
Gene3D 163 250 88 G3DSA:3.30.750.44 none none none
Phobius 374 394 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 234 308 75 PS50106 none PDZ domain profile. IPR001478
Phobius 395 399 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 114 531 418 PTHR32060:SF7 none none none
PANTHER 114 531 418 PTHR32060 none none none
Phobius 154 373 220 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SMART 321 531 211 SM00245 none tail specific protease IPR005151
Phobius 400 420 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 350 368 19 SSF52096 none none IPR029045
SUPERFAMILY 164 270 107 SSF52096 none none IPR029045
SUPERFAMILY 404 535 132 SSF52096 none none IPR029045
Phobius 421 562 142 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 327 374 48 G3DSA:3.90.226.10 none none IPR029045
Phobius 132 153 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 421 537 117 G3DSA:3.90.226.10 none none IPR029045
SUPERFAMILY 217 340 124 SSF50156 none none IPR001478

1 Localization

Analysis Start End Length
TMHMM 373 395 22

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting