Protein : Qrob_P0377270.2 Q. robur
Protein Identifier  ? Qrob_P0377270.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR12428//PTHR12428:SF16 - OXA1 // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 158  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0051205 protein insertion into membrane The process that results in the incorporation of a protein into a biological membrane. Incorporation in this context means having some part or covalently attached group that is inserted into the the hydrophobic region of one or both bilayers.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_002G225900g 1 93 + 93 Gaps:16 49.55 220 64.22 9e-37 hypothetical protein
blastp_kegg lcl|gmx:100792907 1 93 + 93 Gaps:16 25.29 431 65.14 2e-36 mitochondrial inner membrane protein OXA1-like
blastp_kegg lcl|gmx:100817052 1 93 + 93 Gaps:16 25.29 431 64.22 1e-35 mitochondrial inner membrane protein OXA1-like
blastp_kegg lcl|gmx:100787806 1 93 + 93 Gaps:16 25.35 430 64.22 9e-35 mitochondrial inner membrane protein OXA1-like
blastp_kegg lcl|cit:102611077 1 98 + 98 Gaps:17 26.38 436 60.87 3e-34 mitochondrial inner membrane protein OXA1-like
blastp_kegg lcl|pvu:PHAVU_006G016400g 1 93 + 93 Gaps:16 25.41 429 61.47 4e-34 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10020194mg 1 98 + 98 Gaps:17 26.38 436 59.13 3e-33 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s10600g 1 98 + 98 Gaps:17 25.05 459 59.13 4e-33 POPTRDRAFT_751211 Inner membrane protein OXA1
blastp_kegg lcl|cam:101489652 1 93 + 93 Gaps:16 25.53 427 57.80 6e-33 mitochondrial inner membrane protein OXA1-like
blastp_kegg lcl|mtr:MTR_7g036950 1 93 + 93 Gaps:17 24.66 446 57.27 7e-31 Mitochondrial inner membrane protein OXA1
blastp_uniprot_sprot sp|Q9SKD3|OXA1L_ARATH 3 93 + 91 Gaps:16 24.83 431 57.01 2e-30 Mitochondrial inner membrane protein OXA1-like OS Arabidopsis thaliana GN OXA1L PE 2 SV 1
blastp_uniprot_sprot sp|Q42191|OXA1_ARATH 1 93 + 93 Gaps:17 25.64 429 45.45 6e-23 Mitochondrial inner membrane protein OXA1 OS Arabidopsis thaliana GN OXA1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M3B7|FBL54_ARATH 7 63 + 57 none 9.05 630 52.63 3e-11 Putative F-box/LRR-repeat protein At3g49150 OS Arabidopsis thaliana GN At3g49150 PE 4 SV 2
blastp_uniprot_sprot sp|O43092|OXA12_SCHPO 15 103 + 89 Gaps:1 21.52 409 32.95 2e-08 Mitochondrial inner membrane protein oxa1-2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN oxa102 PE 2 SV 2
blastp_uniprot_sprot sp|Q3SYV3|OXA1L_BOVIN 7 72 + 66 none 14.97 441 34.85 2e-06 Mitochondrial inner membrane protein OXA1L OS Bos taurus GN OXA1L PE 2 SV 1
blastp_uniprot_sprot sp|O13375|OXA1_SACSE 24 104 + 81 Gaps:19 24.80 371 29.35 4e-06 Mitochondrial inner membrane protein OXA1 OS Saccharomyces servazzii GN OXA1 PE 3 SV 1
blastp_uniprot_sprot sp|P39952|OXA1_YEAST 24 77 + 54 none 13.43 402 35.19 7e-06 Mitochondrial inner membrane protein OXA1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN OXA1 PE 1 SV 1
rpsblast_cdd gnl|CDD|202110 42 96 + 55 Gaps:17 34.20 193 37.88 1e-08 pfam02096 60KD_IMP 60Kd inner membrane protein.
rpsblast_cdd gnl|CDD|31050 22 99 + 78 Gaps:13 28.34 314 24.72 4e-08 COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion].
rpsblast_kog gnl|CDD|36453 3 93 + 91 Gaps:16 28.76 372 33.64 5e-16 KOG1239 KOG1239 KOG1239 Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification protein turnover chaperones Intracellular trafficking secretion and vesicular transport].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 64 157 94 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 19 19 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 12 19 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 43 63 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 3 11 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 20 42 23 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 42 78 37 PF02096 none 60Kd inner membrane protein IPR001708
PANTHER 5 77 73 PTHR12428 none none IPR001708
PANTHER 5 77 73 PTHR12428:SF16 none none none

1 Localization

Analysis Start End Length
TMHMM 41 63 22

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting