Protein : Qrob_P0372390.2 Q. robur
Protein Identifier  ? Qrob_P0372390.2 Organism . Name  Quercus robur
Score  93.2 Score Type  egn
Protein Description  (M=1) K03023 - DNA-directed RNA polymerase III subunit RPC3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 265  
Kegg Orthology  K03023
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_015180 4 247 + 244 none 46.65 523 68.03 1e-105 RNA polymerase III subunit RPC82 family protein putative isoform 1
blastp_kegg lcl|vvi:100267008 6 252 + 247 Gaps:12 45.99 511 70.64 8e-100 DNA-directed RNA polymerase III subunit RPC3-like
blastp_kegg lcl|cit:102613614 7 247 + 241 Gaps:3 45.16 527 69.75 1e-98 DNA-directed RNA polymerase III subunit RPC3-like
blastp_kegg lcl|rcu:RCOM_1495680 7 247 + 241 Gaps:14 47.22 485 65.50 7e-90 DNA-directed RNA polymerase III 62 kDa polypeptide putative
blastp_kegg lcl|cmo:103484083 4 247 + 244 Gaps:11 44.64 522 62.23 8e-89 DNA-directed RNA polymerase III subunit RPC3
blastp_kegg lcl|csv:101211588 4 247 + 244 Gaps:7 46.14 518 60.25 1e-86 DNA-directed RNA polymerase III subunit RPC3-like
blastp_kegg lcl|pxb:103932204 4 247 + 244 Gaps:10 46.25 506 64.53 2e-86 DNA-directed RNA polymerase III subunit RPC3-like
blastp_kegg lcl|mdm:103440640 4 247 + 244 Gaps:10 46.46 508 63.56 3e-83 DNA-directed RNA polymerase III subunit RPC3-like
blastp_kegg lcl|pvu:PHAVU_007G071300g 4 247 + 244 Gaps:16 44.49 517 61.30 3e-82 hypothetical protein
blastp_kegg lcl|gmx:100803947 4 250 + 247 Gaps:14 44.98 518 60.09 9e-82 DNA-directed RNA polymerase III subunit RPC3-like
blastp_pdb 2xv4_S 54 247 + 194 Gaps:20 36.33 534 26.29 3e-09 mol:protein length:534 DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC3
blastp_pdb 2xub_A 54 247 + 194 Gaps:20 36.33 534 26.29 3e-09 mol:protein length:534 DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC3
blastp_uniprot_sprot sp|Q9BUI4|RPC3_HUMAN 54 247 + 194 Gaps:20 36.33 534 26.29 1e-08 DNA-directed RNA polymerase III subunit RPC3 OS Homo sapiens GN POLR3C PE 1 SV 1
blastp_uniprot_sprot sp|Q2TBL4|RPC3_BOVIN 54 247 + 194 Gaps:12 36.02 533 25.00 2e-08 DNA-directed RNA polymerase III subunit RPC3 OS Bos taurus GN POLR3C PE 2 SV 1
blastp_uniprot_sprot sp|Q5XIL3|RPC3_RAT 63 247 + 185 Gaps:11 34.52 533 24.46 2e-08 DNA-directed RNA polymerase III subunit RPC3 OS Rattus norvegicus GN Polr3c PE 2 SV 1
blastp_uniprot_sprot sp|Q9D483|RPC3_MOUSE 54 247 + 194 Gaps:11 36.21 533 23.32 9e-08 DNA-directed RNA polymerase III subunit RPC3 OS Mus musculus GN Polr3c PE 2 SV 1
blastp_uniprot_sprot sp|Q7ZUX1|RPC3_DANRE 52 247 + 196 Gaps:9 36.55 539 25.38 3e-07 DNA-directed RNA polymerase III subunit RPC3 OS Danio rerio GN polr3c PE 2 SV 1
rpsblast_cdd gnl|CDD|191331 3 183 + 181 Gaps:25 80.00 215 19.77 3e-07 pfam05645 RNA_pol_Rpc82 RNA polymerase III subunit RPC82. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In Saccharomyces cerevisiae the enzyme is composed of 15 subunits ranging from 160 to about 10 kDa.
rpsblast_kog gnl|CDD|37798 5 247 + 243 Gaps:42 50.64 551 22.58 7e-24 KOG2587 KOG2587 KOG2587 RNA polymerase III (C) subunit [Transcription].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 42 247 206 PTHR12949 none none none
Pfam 5 143 139 PF05645 none RNA polymerase III subunit RPC82 IPR008806

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran2_2002_QTL12_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 4,33 33,33 lod 6,5 9,1

0 Targeting