Protein : Qrob_P0372280.2 Q. robur
Protein Identifier  ? Qrob_P0372280.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR11562//PTHR11562:SF13 - CATION EFFLUX PROTEIN/ ZINC TRANSPORTER // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 890  
Kegg Orthology  K14692
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006812 cation transport The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0008324 cation transmembrane transporter activity Enables the transfer of cation from one side of the membrane to the other.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103330195 20 889 + 870 Gaps:87 98.11 900 68.86 0.0 probable zinc transporter protein DDB_G0282067
blastp_kegg lcl|cit:102615971 13 888 + 876 Gaps:39 99.53 851 68.48 0.0 probable zinc transporter protein DDB_G0291141-like
blastp_kegg lcl|cic:CICLE_v10014254mg 13 888 + 876 Gaps:41 99.53 849 68.64 0.0 hypothetical protein
blastp_kegg lcl|ath:AT2G04620 17 888 + 872 Gaps:98 98.25 798 68.88 0.0 cation efflux family protein
blastp_kegg lcl|tcc:TCM_017990 150 888 + 739 Gaps:67 85.35 874 66.76 0.0 Cation efflux family protein
blastp_kegg lcl|pda:103713083 172 888 + 717 Gaps:33 93.89 769 60.11 0.0 uncharacterized LOC103713083
blastp_kegg lcl|mdm:103404376 21 658 + 638 Gaps:23 68.59 917 73.93 0.0 zinc transporter 5
blastp_kegg lcl|vvi:100252487 21 888 + 868 Gaps:16 86.49 807 79.51 0.0 uncharacterized LOC100252487
blastp_kegg lcl|cmo:103487050 16 642 + 627 Gaps:34 70.26 881 68.50 0.0 probable zinc transporter protein DDB_G0291141
blastp_kegg lcl|csv:101207849 16 886 + 871 Gaps:30 89.88 820 72.32 0.0 uncharacterized LOC101207849
blastp_uniprot_sprot sp|Q9SI03|MTP12_ARATH 425 888 + 464 none 97.00 300 84.54 1e-83 Metal tolerance protein 12 OS Arabidopsis thaliana GN MTP12 PE 3 SV 1
blastp_uniprot_sprot sp|Q8H329|MTP8_ORYSJ 436 888 + 453 Gaps:9 99.37 316 75.80 4e-74 Metal tolerance protein 8 OS Oryza sativa subsp. japonica GN MTP8 PE 2 SV 2
blastp_uniprot_sprot sp|Q9HGQ3|CIS4_SCHPO 439 886 + 448 Gaps:68 52.73 732 36.53 8e-44 Probable zinc transporter cis4 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cis4 PE 1 SV 1
blastp_uniprot_sprot sp|Q8TAD4|ZNT5_HUMAN 412 582 + 171 Gaps:2 22.35 765 43.27 7e-36 Zinc transporter 5 OS Homo sapiens GN SLC30A5 PE 1 SV 1
blastp_uniprot_sprot sp|Q8R4H9|ZNT5_MOUSE 427 886 + 460 Gaps:40 43.50 761 44.71 1e-35 Zinc transporter 5 OS Mus musculus GN Slc30a5 PE 2 SV 1
blastp_uniprot_sprot sp|Q5ZLF4|ZNT5_CHICK 412 886 + 475 Gaps:21 42.21 770 43.38 1e-35 Zinc transporter 5 OS Gallus gallus GN SLC30A5 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DG36|ZNT5_DANRE 304 586 + 283 Gaps:49 41.29 775 33.12 2e-34 Zinc transporter 5 OS Danio rerio GN slc30a5 PE 2 SV 1
blastp_uniprot_sprot sp|Q28CE7|ZNT5_XENTR 439 886 + 448 Gaps:42 40.93 777 43.08 2e-33 Zinc transporter 5 OS Xenopus tropicalis GN slc30a5 PE 2 SV 1
blastp_uniprot_sprot sp|Q5MNV6|ZNT7_CHICK 440 886 + 447 Gaps:29 92.06 378 38.51 2e-29 Zinc transporter 7 OS Gallus gallus GN SLC30A7 PE 2 SV 1
blastp_uniprot_sprot sp|Q8NEW0|ZNT7_HUMAN 440 886 + 447 Gaps:49 92.02 376 40.75 2e-29 Zinc transporter 7 OS Homo sapiens GN SLC30A7 PE 2 SV 1
rpsblast_cdd gnl|CDD|211639 460 886 + 427 Gaps:13 99.25 268 35.71 3e-33 TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters a number of which have been shown to transport divalent cations of cobalt cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts often containing low-complexity sequence.
rpsblast_cdd gnl|CDD|31423 444 889 + 446 Gaps:5 94.26 296 36.92 9e-31 COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].
rpsblast_cdd gnl|CDD|201849 460 886 + 427 Gaps:14 97.80 273 30.34 8e-25 pfam01545 Cation_efflux Cation efflux family. Members of this family are integral membrane proteins that are found to increase tolerance to divalent metal ions such as cadmium zinc and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells.
rpsblast_cdd gnl|CDD|179593 448 841 + 394 Gaps:3 70.51 312 36.82 2e-20 PRK03557 PRK03557 zinc transporter ZitB Provisional.
rpsblast_cdd gnl|CDD|30402 446 575 + 130 Gaps:2 43.42 304 27.27 9e-19 COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].
rpsblast_cdd gnl|CDD|182198 657 706 + 50 Gaps:3 16.85 279 57.45 1e-09 PRK10019 PRK10019 nickel/cobalt efflux protein RcnA Provisional.
rpsblast_cdd gnl|CDD|181940 653 686 + 34 Gaps:1 10.61 311 42.42 1e-07 PRK09545 znuA high-affinity zinc transporter periplasmic component Reviewed.
rpsblast_kog gnl|CDD|36697 424 886 + 463 Gaps:40 94.92 354 53.27 6e-55 KOG1484 KOG1484 KOG1484 Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism].
rpsblast_kog gnl|CDD|36696 446 886 + 441 Gaps:21 89.85 404 31.13 4e-24 KOG1483 KOG1483 KOG1483 Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism].
rpsblast_kog gnl|CDD|36695 449 886 + 438 Gaps:54 77.04 379 32.53 2e-23 KOG1482 KOG1482 KOG1482 Zn2+ transporter [Inorganic ion transport and metabolism].

45 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 310 331 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 472 476 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 169 186 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 103 113 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 114 135 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 518 537 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 414 450 37 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 738 889 152 PTHR11562:SF13 none none none
PANTHER 649 690 42 PTHR11562:SF13 none none none
Pfam 453 887 435 PF01545 none Cation efflux family IPR002524
PANTHER 419 607 189 PTHR11562:SF13 none none none
Phobius 332 342 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 773 777 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 451 471 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 498 517 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 396 413 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 741 809 69 SSF161111 none none none
SUPERFAMILY 446 576 131 SSF161111 none none none
Phobius 343 362 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 801 889 89 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 778 800 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 649 690 42 PTHR11562 none none IPR002524
Phobius 187 191 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 573 750 178 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 136 168 33 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 273 290 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 538 548 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 211 230 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 751 772 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 84 102 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

12 Localization

Analysis Start End Length
TMHMM 777 799 22
TMHMM 550 572 22
TMHMM 273 290 17
TMHMM 388 410 22
TMHMM 518 540 22
TMHMM 483 505 22
TMHMM 750 772 22
TMHMM 114 136 22
TMHMM 311 333 22
TMHMM 229 246 17
TMHMM 82 104 22
TMHMM 451 473 22

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting