8 GO Terms
Identifier | Name | Description |
---|---|---|
GO:0008270 | zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
GO:0003824 | catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
GO:0005975 | carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. |
GO:0030246 | carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
GO:0006013 | mannose metabolic process | The chemical reactions and pathways involving mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins. |
GO:0015923 | mannosidase activity | Catalysis of the hydrolysis of mannosyl compounds, substances containing a group derived from a cyclic form of mannose or a mannose derivative. |
GO:0004559 | alpha-mannosidase activity | Catalysis of the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides. |
43 Blast
Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
---|---|---|---|---|---|---|---|---|---|---|---|
blastp_kegg | lcl|mdm:103442297 | 1 | 1149 | + | 1149 | Gaps:28 | 99.83 | 1161 | 80.59 | 0.0 | alpha-mannosidase 2x-like |
blastp_kegg | lcl|pxb:103928463 | 1 | 1149 | + | 1149 | Gaps:32 | 99.83 | 1165 | 79.88 | 0.0 | alpha-mannosidase 2x |
blastp_kegg | lcl|pmum:103329931 | 1 | 1151 | + | 1151 | Gaps:24 | 100.00 | 1163 | 81.08 | 0.0 | alpha-mannosidase 2x |
blastp_kegg | lcl|pper:PRUPE_ppa000458mg | 1 | 1151 | + | 1151 | Gaps:24 | 100.00 | 1163 | 81.34 | 0.0 | hypothetical protein |
blastp_kegg | lcl|mdm:103404378 | 1 | 1151 | + | 1151 | Gaps:28 | 100.00 | 1161 | 80.02 | 0.0 | alpha-mannosidase 2x-like |
blastp_kegg | lcl|fve:101296768 | 2 | 1151 | + | 1150 | Gaps:20 | 99.66 | 1160 | 80.28 | 0.0 | alpha-mannosidase 2x-like |
blastp_kegg | lcl|vvi:100243903 | 1 | 1149 | + | 1149 | Gaps:28 | 100.00 | 1149 | 79.63 | 0.0 | MAN2A2 mannosidase alpha class 2A member 2 |
blastp_kegg | lcl|rcu:RCOM_0852760 | 4 | 1151 | + | 1148 | Gaps:39 | 99.24 | 1180 | 77.88 | 0.0 | mannosidase alpha class 2a putative (EC:3.2.1.114) |
blastp_kegg | lcl|tcc:TCM_017957 | 4 | 1151 | + | 1148 | Gaps:27 | 99.31 | 1163 | 78.96 | 0.0 | Golgi alpha-mannosidase II isoform 1 |
blastp_kegg | lcl|cit:102615196 | 1 | 1151 | + | 1151 | Gaps:38 | 100.00 | 1167 | 77.89 | 0.0 | alpha-mannosidase 2x-like |
blastp_pdb | 3eju_A | 90 | 1011 | + | 922 | Gaps:102 | 87.85 | 1045 | 41.83 | 0.0 | mol:protein length:1045 Alpha-mannosidase 2 |
blastp_pdb | 3ejt_A | 90 | 1011 | + | 922 | Gaps:102 | 87.85 | 1045 | 41.83 | 0.0 | mol:protein length:1045 Alpha-mannosidase 2 |
blastp_pdb | 3ejs_A | 90 | 1011 | + | 922 | Gaps:102 | 87.85 | 1045 | 41.83 | 0.0 | mol:protein length:1045 Alpha-mannosidase 2 |
blastp_pdb | 3ejr_A | 90 | 1011 | + | 922 | Gaps:102 | 87.85 | 1045 | 41.83 | 0.0 | mol:protein length:1045 Alpha-mannosidase 2 |
blastp_pdb | 3ejq_A | 90 | 1011 | + | 922 | Gaps:102 | 87.85 | 1045 | 41.83 | 0.0 | mol:protein length:1045 Alpha-mannosidase 2 |
blastp_pdb | 3ejp_A | 90 | 1011 | + | 922 | Gaps:102 | 87.85 | 1045 | 41.83 | 0.0 | mol:protein length:1045 Alpha-mannosidase 2 |
blastp_pdb | 3dx4_A | 90 | 1011 | + | 922 | Gaps:102 | 87.85 | 1045 | 41.83 | 0.0 | mol:protein length:1045 Alpha-mannosidase 2 |
blastp_pdb | 3dx3_A | 90 | 1011 | + | 922 | Gaps:102 | 87.85 | 1045 | 41.83 | 0.0 | mol:protein length:1045 Alpha-mannosidase 2 |
blastp_pdb | 3dx2_A | 90 | 1011 | + | 922 | Gaps:102 | 87.85 | 1045 | 41.83 | 0.0 | mol:protein length:1045 Alpha-mannosidase 2 |
blastp_pdb | 3dx1_A | 90 | 1011 | + | 922 | Gaps:102 | 87.85 | 1045 | 41.83 | 0.0 | mol:protein length:1045 Alpha-mannosidase 2 |
blastp_uniprot_sprot | sp|P49641|MA2A2_HUMAN | 122 | 1147 | + | 1026 | Gaps:64 | 88.17 | 1150 | 42.31 | 0.0 | Alpha-mannosidase 2x OS Homo sapiens GN MAN2A2 PE 2 SV 3 |
blastp_uniprot_sprot | sp|Q8BRK9|MA2A2_MOUSE | 122 | 1147 | + | 1026 | Gaps:62 | 88.19 | 1152 | 41.63 | 0.0 | Alpha-mannosidase 2x OS Mus musculus GN Man2a2 PE 2 SV 2 |
blastp_uniprot_sprot | sp|P27046|MA2A1_MOUSE | 114 | 1148 | + | 1035 | Gaps:59 | 88.87 | 1150 | 41.00 | 0.0 | Alpha-mannosidase 2 OS Mus musculus GN Man2a1 PE 1 SV 2 |
blastp_uniprot_sprot | sp|Q16706|MA2A1_HUMAN | 114 | 1148 | + | 1035 | Gaps:72 | 88.90 | 1144 | 41.49 | 0.0 | Alpha-mannosidase 2 OS Homo sapiens GN MAN2A1 PE 1 SV 2 |
blastp_uniprot_sprot | sp|Q24451|MAN2_DROME | 90 | 1011 | + | 922 | Gaps:102 | 82.85 | 1108 | 41.83 | 0.0 | Alpha-mannosidase 2 OS Drosophila melanogaster GN alpha-Man-II PE 1 SV 2 |
blastp_uniprot_sprot | sp|P28494|MA2A1_RAT | 114 | 506 | + | 393 | Gaps:20 | 80.78 | 489 | 54.94 | 7e-147 | Alpha-mannosidase 2 (Fragment) OS Rattus norvegicus GN Man2a1 PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q54YF7|MANB_DICDI | 152 | 946 | + | 795 | Gaps:128 | 78.55 | 1035 | 31.12 | 1e-81 | Alpha-mannosidase B OS Dictyostelium discoideum GN manB PE 3 SV 1 |
blastp_uniprot_sprot | sp|P34098|MANA_DICDI | 149 | 1044 | + | 896 | Gaps:152 | 85.74 | 1010 | 31.29 | 6e-80 | Lysosomal alpha-mannosidase OS Dictyostelium discoideum GN manA PE 1 SV 2 |
blastp_uniprot_sprot | sp|Q54KN4|MANF_DICDI | 151 | 974 | + | 824 | Gaps:171 | 80.99 | 994 | 30.43 | 2e-76 | Alpha-mannosidase F OS Dictyostelium discoideum GN manF PE 3 SV 1 |
blastp_uniprot_sprot | sp|O09159|MA2B1_MOUSE | 152 | 1043 | + | 892 | Gaps:172 | 83.32 | 1013 | 30.92 | 8e-74 | Lysosomal alpha-mannosidase OS Mus musculus GN Man2b1 PE 2 SV 4 |
16 Domain Motifs
Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
---|---|---|---|---|---|---|---|
Phobius | 1 | 40 | 40 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
Gene3D | 110 | 483 | 374 | G3DSA:3.20.110.10 | none | none | IPR027291 |
SMART | 486 | 571 | 86 | SM00872 | none | Alpha mannosidase, middle domain | IPR015341 |
SUPERFAMILY | 113 | 483 | 371 | SSF88713 | none | none | IPR011330 |
Phobius | 41 | 67 | 27 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
Pfam | 153 | 481 | 329 | PF01074 | none | Glycosyl hydrolases family 38 N-terminal domain | IPR000602 |
Gene3D | 752 | 976 | 225 | G3DSA:2.70.98.30 | none | none | none |
SUPERFAMILY | 605 | 1147 | 543 | SSF74650 | none | none | IPR011013 |
PANTHER | 113 | 1151 | 1039 | PTHR11607:SF4 | none | none | none |
Phobius | 68 | 1151 | 1084 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
PANTHER | 113 | 1151 | 1039 | PTHR11607 | none | none | none |
Gene3D | 486 | 593 | 108 | G3DSA:1.20.1270.50 | none | none | IPR015341 |
Gene3D | 605 | 751 | 147 | G3DSA:2.60.40.1180 | none | none | IPR013780 |
Pfam | 487 | 571 | 85 | PF09261 | none | Alpha mannosidase, middle domain | IPR015341 |
Pfam | 631 | 1144 | 514 | PF07748 | none | Glycosyl hydrolases family 38 C-terminal domain | IPR011682 |
SUPERFAMILY | 486 | 590 | 105 | SSF88688 | none | none | IPR028995 |
4 Qtllist
Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
---|---|---|---|---|---|---|---|---|---|---|
Bourran2_2015_nEpis_3P | Qrob_Chr12 | 12 | s_1AOES6_1466 | s_1B0DDG_1094 | 28,97 | 28,55 | 30,1 | lod | 3.6 | 8.4 |
Champenoux_2015_nEpis_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 26,53 | 25,47 | 27,72 | lod | 4.4 | 8.9 |
Bourran2_2015_nSeqBC_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 26,06 | 25,47 | 27,72 | lod | 3.6 | 7.1 |
Champenoux_2015_nSecLBD_3P | Qrob_Chr11 | 11 | s_1DG9PM_867 | s_1BZ083_1312 | 25,78 | 25,47 | 27,72 | lod | 6.3 | 16.6 |